Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,212,299 – 24,212,403 |
Length | 104 |
Max. P | 0.641848 |
Location | 24,212,299 – 24,212,403 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 92.10 |
Mean single sequence MFE | -15.59 |
Consensus MFE | -12.73 |
Energy contribution | -12.72 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.82 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24212299 104 + 27905053 UGCCACGCCCACCGCACACACA--CAC-ACACACAGCACUCCGGCGUACGCCCAUAAAUAAAACAUUUCACUUUGUUUUGUCGACUGCCUCUUAGCCUAAACAAACA .((...((.....)).......--...-.......(((.((.(((....))).....((((((((........)))))))).)).)))......))........... ( -14.00) >DroSec_CAF1 34923 100 + 1 UGCCACGCCCACCGCACACAC-------ACACACAGCACUCCGGCGCACGCCCAUAAAUAAAACAUUUCACUUUGUUUUGUCGACUGCCUCUUAGCCUAAACAAACA .((...((.....))......-------.......(((.((.(((....))).....((((((((........)))))))).)).)))......))........... ( -14.00) >DroSim_CAF1 38867 104 + 1 UGCCACGCCCACCGCACACACA--CAC-ACACACAGCACUCCGGCGCACGCCCAUAAAUAAAACAUUUCACUUUGUUUUGUCGACUGCCUCUUAGCCUAAACAAACA .((...((.....)).......--...-.......(((.((.(((....))).....((((((((........)))))))).)).)))......))........... ( -14.00) >DroAna_CAF1 33397 105 + 1 CGCCACGCCCACCG-ACACA-ACACGUAGCAUACAGCACUCGGGCAUACGCCCAUAAAUAAAACAUUUCACUUUGUUUUGUCGACUGCCUCUUAGCCUAAACAAACA .((.(((.......-.....-...))).)).....(((.((((((....))))....((((((((........)))))))).)).)))................... ( -20.36) >consensus UGCCACGCCCACCGCACACACA__CAC_ACACACAGCACUCCGGCGCACGCCCAUAAAUAAAACAUUUCACUUUGUUUUGUCGACUGCCUCUUAGCCUAAACAAACA ...................................(((.((.(((....))).....((((((((........)))))))).)).)))................... (-12.73 = -12.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:42 2006