Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,211,790 – 24,211,903 |
Length | 113 |
Max. P | 0.881275 |
Location | 24,211,790 – 24,211,903 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.84 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -21.08 |
Energy contribution | -21.05 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.10 |
Mean z-score | -1.78 |
Structure conservation index | 0.64 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24211790 113 - 27905053 UGCUGCUGCUCCAAC---UACCACUGAGC---UCC-UCUGCCCCCCGCAGUUCGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCGGCAGGAAGAAUCAAGUAGUUU .((((((((((....---.......))))---...-((((((....((((..((((.(((.....))).)))))))).(((((.......)))))...))))))........)))))).. ( -34.20) >DroPse_CAF1 35771 106 - 1 UGCUGCUAGUGC-----------CUUGGC---CCCUGCUGUGCCGUGCCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU .((((((...((-----------....))---.(((((((.((.((((((.(...............))))))).)).(((((.......)))))..)))))))........)))))).. ( -36.06) >DroGri_CAF1 8444 104 - 1 UGCUGCUUUUGCUGU---UGCUAUU-----------GCU--GCUGCGUUGCCUGCUUUAUUUAUUAUGUGGUGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUAU ((((((((..((...---.))..((-----------.((--((((.((.(((..(............)..).)).)).(((((.......)))))..)))))).)).....)))))))). ( -30.30) >DroYak_CAF1 36958 119 - 1 UGCUGCCGCUCCAACUACUACCACUGAGCUGCUCC-UCGGCCCCCCGCAGUCCGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCGGCAGGAAGAAUCAAGUAGUUU ((((((.((((..............)))).))(((-(..(((....(((((((((............)))).))))).(((((.......)))))...))))))).......)))).... ( -33.64) >DroAna_CAF1 32888 96 - 1 UGCUCCUGA-----------------------UUC-CCCGUACCCCGUCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU ((((..(((-----------------------(((-.((..............(((.(((.....))).)))((((..(((((.......)))))..)))).))..)))))))))).... ( -26.10) >DroPer_CAF1 35803 106 - 1 UGCUGCUAGUGC-----------CUUGGC---CCCUGCUGUGCCGUGCCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU .((((((...((-----------....))---.(((((((.((.((((((.(...............))))))).)).(((((.......)))))..)))))))........)))))).. ( -36.06) >consensus UGCUGCUGCUGC___________CU__GC___UCC_GCUGUGCCCCGCCGUCUGCUUUAUUUAUUAUGUGGCGCUGCUGUGCUUACUUUUGGCACUCCAGCAGGAAGAAUCAAGUAGUUU .((((((..............................................(((.(((.....))).)))((((..(((((.......)))))..))))...........)))))).. (-21.08 = -21.05 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:41 2006