Locus 9056

Sequence ID 3R_DroMel_CAF1
Location 24,209,266 – 24,209,367
Length 101
Max. P 0.581347
window14502

overview

Window 2

Location 24,209,266 – 24,209,367
Length 101
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.56
Mean single sequence MFE -30.93
Consensus MFE -23.40
Energy contribution -23.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.07
Structure conservation index 0.76
SVM decision value 0.10
SVM RNA-class probability 0.581347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24209266 101 + 27905053
UCCUUUCGGCUG-CCAAAGGAGCCGGCGU-------GGGUGGCAUGGACUUUGCGCUUUACACGCGUGUAAUGUGCAAAAACGGCGUUUAAUGCCUCACUAAUCCCUCA
.....((((((.-(....).)))))).(.-------(((.((((((((((((((((.(((((....))))).)))))))......)))).)))))........))).). ( -32.90)
>DroPse_CAF1 33235 102 + 1
-------GGGUGGGUAUGGGUAGGGGUAUGGGUAUGGGGAGGCAUGGACUUUGCGCUUUACACGCGUGUAAUGUGCAAAAACGGCGUUUAAUGCCUCACUAAUCCCUCA
-------(((.((((...(((.(((((((........(((.((.((...(((((((.(((((....))))).)))))))..)))).))).)))))))))).))))))). ( -34.00)
>DroEre_CAF1 36707 100 + 1
UCCUUUUCGCUG-GCAA-GGAGGCGGCGU-------GGGUGGCAUGGACUUUGCGCUUUACACGCGUGUAAUGUGCAAAAACGGCGUUUAAUGCCUCACUAAUCCCUCA
.......(((((-.(..-...).)))))(-------(((.((..(((..(((((((.(((((....))))).)))))))...(((((...)))))...)))..)))))) ( -31.50)
>DroYak_CAF1 33724 96 + 1
UCCUUUUGGCUG-GCAA---AGGCG--GU-------GGGUGGCAUGGACUUUGCGCUUUACACGCGUGUAAUGUGCAAAAACGGCGUUUAAUGCCUCACUAAUCCCUCA
..((((((....-.)))---))).(--(.-------.(((((.......(((((((.(((((....))))).)))))))...(((((...))))))))))...)).... ( -27.40)
>DroAna_CAF1 30767 84 + 1
------------------GGUGGCCGAGU-------GGGCGGCAUGGACUUUGCGCUUUACACGCGUGUAAUGUGCAAAAACGGCGUUUAAUGCCUCACUAAUCCCUCA
------------------(((((((....-------.)))((((((((((((((((.(((((....))))).)))))))......)))).))))).))))......... ( -28.00)
>DroPer_CAF1 33198 90 + 1
-------GGGUGGGUAU------------GGGUAUGGGGAGGCAUGGACUUUGCGCUUUACACGCGUGUAAUGUGCAAAAACGGCGUUUAAUGCCUCACUAAUCCCUCA
-------(((..(((..------------((((((..(((.((.((...(((((((.(((((....))))).)))))))..)))).))).)))))).)))...)))... ( -31.80)
>consensus
_______GGCUG_GCAA_GGAGGCGG_GU_______GGGUGGCAUGGACUUUGCGCUUUACACGCGUGUAAUGUGCAAAAACGGCGUUUAAUGCCUCACUAAUCCCUCA
....................................(((.((..(((..(((((((.(((((....))))).)))))))...(((((...)))))...)))..))))). (-23.40 = -23.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:40 2006