| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,206,827 – 24,206,920 |
| Length | 93 |
| Max. P | 0.766833 |
| Location | 24,206,827 – 24,206,920 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.22 |
| Mean single sequence MFE | -18.67 |
| Consensus MFE | -10.47 |
| Energy contribution | -11.08 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24206827 93 - 27905053 AAAAAAA-----------GUUGAAAAAA----CGCAAAAAUCUCAAAACAAACUGAAUUAAGUUGCUGCACUUUUUUGCGAGCAUGCAGCACACUU-UUCGGGAUUUAC .......-----------(((.....))----)....(((((((......((((......))))(((((((((......)))..))))))......-...))))))).. ( -18.90) >DroSec_CAF1 29571 92 - 1 AAAAAAA-----------GGUGAAAAAA----CGCAAAAAUCCCAAAACAAACUGAAUUAAGUUGCUGCACUU-UUUGCUAGCAUGCAGCACACUU-UUCGGGAUUUAC .......-----------.(((......----)))..(((((((......((((......))))((((((...-..((....))))))))......-...))))))).. ( -21.50) >DroEre_CAF1 34269 94 - 1 AAAAAAG-GG--------GGUGAAAAAA----CGGAAAAAUCCCAAAACAAACUGAAUUAAGUUGGUGCACUU-UUUGCGAGCAUGCAGCACACUU-UUCGGGAUUUAC .......-((--------(((.......----.......)))))........(((((..((((((.(((((((-.....)))..)))).)).))))-)))))....... ( -18.14) >DroYak_CAF1 31237 98 - 1 AAAAAAU-AA--------GGAUAAAAAAAAUGUGGAAAAAUCCCAAAACAAACUGAAUUAAGUUGGUGCACUU-UUUGCGAGCAUGCAGCACACUU-UUCGGGAUUUAC .......-..--------...................(((((((......((((......)))).((((....-..(((......)))))))....-...))))))).. ( -17.20) >DroAna_CAF1 27804 95 - 1 AAAAAUAUACGUAUAUUGUAUGAAAAAG----CG-AAAAAUCCCAAAACAAACUGAAUUAAGUUGGCUCACUU-UUU--------GCAGCACAGUUUUUUGGGAUUUGC .....((((((.....))))))......----..-..(((((((((((..(((((..........(((((...-..)--------).))).)))))))))))))))).. ( -20.10) >DroPer_CAF1 30722 83 - 1 AAAAAAA-----------GC--ACCGGA----CAAGAAAUUCCCAAAACAAACUGAAUUAAGUUUGUGCAGUU-UUU--------GUAGCAUACUUUUUUGGGAUUUAC .......-----------..--......----........((((((((((((((......)))))))...(((-...--------..))).......)))))))..... ( -16.20) >consensus AAAAAAA___________GGUGAAAAAA____CGCAAAAAUCCCAAAACAAACUGAAUUAAGUUGGUGCACUU_UUUGCGAGCAUGCAGCACACUU_UUCGGGAUUUAC .....................................(((((((......((((......)))).((((...................))))........))))))).. (-10.47 = -11.08 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:37 2006