| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,204,579 – 24,204,691 |
| Length | 112 |
| Max. P | 0.958290 |
| Location | 24,204,579 – 24,204,691 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.06 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -13.84 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24204579 112 - 27905053 UAAAAUUUCAGCAUCCGCCACCCAGAA-----AACCCAACCACCACCC---AUCGUAUUGGCGCAAGCGUCGCGGAAAUAACAAAUUUCUUGCUCGGAAAUUAAUAUUUCCAUUUUGUAG ((((((...(((((((((.((......-----...............(---(......))((....)))).)))))..............)))).((((((....))))))))))))... ( -20.43) >DroPse_CAF1 28731 113 - 1 UAAAAUUUUAACAUCCGCCCCUCACCCCCCCUCUCCAAUCCA----CA---CUCUUAUUGGCGCAGGCGUCGCGGAAAUAACAAAUUUCUUGCUCGGAAAUUAAUAUUUCCAUUUUAUAG ((((((.......(((((..(........((((.(((((...----..---.....))))).).))).)..)))))...................((((((....))))))))))))... ( -17.60) >DroGri_CAF1 1330 103 - 1 UAAAAUUCCUACAUUC--CA---------------CCAACUGCUCCCCAUCAUCGCUUUGGAGCAGGCGUUGCGGAAAUUACAAUUUUCGUUCUCGGAAAUUAAUAUUUCCAUUUUAAAG ((((((..........--..---------------....(((((((.............))))))).......((((((...((((((((....))))))))...))))))))))))... ( -24.72) >DroEre_CAF1 31910 112 - 1 UAAAAUUUCAGCAUCCGCCACCCAGAG-----CAGCCAACCGCCACCC---AUCGUAUUGGCGCAGGCGUCGCGGAAAUAACAAAUUUCUUGCUCGGAAAUUAAUAUUUCCAUUUUAUAG ((((((..................(((-----(((((...(((((...---.......)))))..))).....((((((.....)))))))))))((((((....))))))))))))... ( -27.50) >DroAna_CAF1 25514 103 - 1 UAAAAUUUCAGCAUCCGCCUCCCAUGA--------------ACCUCCC---UUGGUAUUGGCGCAGGCGUCGCGGAAAUAACAAAUUUCUUGCUCGGAAAUUAAUAUUUCCAUUUUAUAG ((((((....((...(((((((((...--------------(((....---..)))..))).).)))))..))(((((((...(((((((.....)))))))..)))))))))))))... ( -28.30) >DroPer_CAF1 28708 105 - 1 UAAAAUUUUAACAUCCGCC--------CCCCUCUCCCAUCCA----CA---CUCUUAUUGGCGCAGGCGUCGCGGAAAUAACAAAUUUCUUGCUCGGAAAUUAAUAUUUCCAUUUUAUAG ((((((.......(((((.--------.((((...(((....----..---.......)))...))).)..)))))...................((((((....))))))))))))... ( -20.02) >consensus UAAAAUUUCAACAUCCGCCACCCA________C_CCCAACCACC_CCC___AUCGUAUUGGCGCAGGCGUCGCGGAAAUAACAAAUUUCUUGCUCGGAAAUUAAUAUUUCCAUUUUAUAG ((((((.....................................................((((....))))..(((((((...(((((((.....)))))))..)))))))))))))... (-13.84 = -14.23 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:34 2006