| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,202,490 – 24,202,597 |
| Length | 107 |
| Max. P | 0.649552 |
| Location | 24,202,490 – 24,202,597 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -19.96 |
| Energy contribution | -19.93 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24202490 107 - 27905053 ----------UUUCGGCCGAGAUUGUUUGUCUGCGGCAAAUGAAUGAAUUGCUCUUUGCUUCUAUGGCAAAUAUGCCAAUUUGGCAACCAUGCCACAUCC-CUUGGCCCAUCC--ACAAU ----------....(((((((.(..(((((.....)))))..)(((....((.....)).....(((((....((((.....))))....))))))))..-))))))).....--..... ( -31.90) >DroPse_CAF1 26610 112 - 1 UCAUUUUUGGUUUCAGCUGAGAUUGUUUGUCUGCGGCAAAUGAAUGAAUUGCUCUUUGCUUCUAUGGCAAAUAUGCCAAUUUGGCUACCAA-------CC-CAUGGCCCAAAACAGCGAA ((((((...((((..((((((((.....)))).)))))))))))))).(((((.(((....((((((.......(((.....)))......-------.)-)))))....))).))))). ( -27.74) >DroSec_CAF1 25230 107 - 1 ----------UUUCGGCCGAGAUUGUUUGUCUGCGGCAAAUGAAUGAAUUGCUCUUUGCUUCUAUGGCAAAUAUGCCAAUUUGGCAACCAUGCCACAUCC-CUGGGCCCAUCC--CCAAU ----------....((((.((.(..(((((.....)))))..)(((....((.....)).....(((((....((((.....))))....))))))))..-)).)))).....--..... ( -30.20) >DroYak_CAF1 26803 107 - 1 ----------UUUCGGCCGAGAUUGUUUGUCUGCGGCAAAUGAAUGAAUUGCUCUUUGCUUCUAUGGCAAAUAUGCCAAUUUGGCAACCAUGCCACAUCC-CAUGGCCCAUCC--CCAAU ----------....(((((((((..(((((.....)))))..).......((.....)).))).(((((....((((.....))))....))))).....-..))))).....--..... ( -28.40) >DroAna_CAF1 23830 108 - 1 ----------UUUGGGCCGAGAUUGUUUGUCUGCGGCAAAUGAAUGAAUUGCUCUUUGCUUCUAUGGCGAAUAUGCCAAUUUGGCAACCAACACAGUUCGCCGUCUACCAUCU--ACUGU ----------..(((((((((((.....)))).))))....((.(((((((...((((((.....))))))..((((.....)))).......)))))))...))..)))...--..... ( -29.20) >DroPer_CAF1 26606 112 - 1 UCAUUUUUGGUUUCAGCUGAGAUUGUUUGUCUGCGGCAAAUGAAUGAAUUGCUCUUUGCUUCUAUGGCAAAUAUGCCAAUUUGGCUACCAA-------CC-CAUGGCCCAAAACAGCGAA ((((((...((((..((((((((.....)))).)))))))))))))).(((((.(((....((((((.......(((.....)))......-------.)-)))))....))).))))). ( -27.74) >consensus __________UUUCGGCCGAGAUUGUUUGUCUGCGGCAAAUGAAUGAAUUGCUCUUUGCUUCUAUGGCAAAUAUGCCAAUUUGGCAACCAAGCCACAUCC_CAUGGCCCAUCC__ACAAU ...............((((((((.....)))).))))..................(((((....(((((....)))))....)))))................................. (-19.96 = -19.93 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:32 2006