Locus 9048

Sequence ID 3R_DroMel_CAF1
Location 24,199,109 – 24,199,228
Length 119
Max. P 0.717432
window14491

overview

Window 1

Location 24,199,109 – 24,199,228
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.50
Mean single sequence MFE -20.17
Consensus MFE -0.82
Energy contribution -2.42
Covariance contribution 1.60
Combinations/Pair 1.33
Mean z-score -1.58
Structure conservation index 0.04
SVM decision value 0.39
SVM RNA-class probability 0.717432
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24199109 119 - 27905053
-UAGUAAGCUUUCUAUCUUUCUAUGAUUUCUAUCUUUCUAUCUAUUUAAGUAGAUAACGAACGGAUUGAAAUAAUUUUCCCGGUUACAAAUCCUCCAUUGGAUUCAAACACCUCACAUCC
-(((.(((........))).)))..(((((.((((((((((((((....)))))))..))).)))).))))).........(((....(((((......))))).....)))........ ( -19.10)
>DroSec_CAF1 21846 119 - 1
-UAGUAAGCUUUCUAUCCUUCUAAGAUUUCUAUCUUUUCAUCUAUUUAAGUAGACAAUGAACGGAUUGAAAUGUUUUUCCCGGUUACGAAUUCUCCAUUGGAUUCAAACACCUCAUAUCC
-....((((((((.(((((((.(((((....)))))....(((((....)))))....))).)))).)))).)))).....(((...((((((......))))))....)))........ ( -21.60)
>DroSim_CAF1 25723 118 - 1
-UGGUAACCUUU-UAUCUUUCGAAGAUUUCUAUCUUUUCAUCUAUUUAAGUAGACAAUGAACGGAUUGAAAUGUUUUUCCCGGUUACGAAUUCUCCAUUGGAUUCAAACACCUCAUAUCC
-..((((((...-..((....))..(((((.((((.(((((((((....)))))...)))).)))).))))).........))))))((((((......))))))............... ( -25.20)
>DroEre_CAF1 26551 97 - 1
UUAGUGAUC---------------------UAUAUGCC--GCUGGUUAGGUAGACAAUGAACUUAUUGAAAUGUUUUUCUCUGCUACAAAUUCUUCACUGCAGUCAAACACCUCAAAGCC
(((.((.((---------------------(((..(((--...)))...))))))).))).....((((..(((((....((((...............))))..)))))..)))).... ( -16.16)
>DroYak_CAF1 23271 102 - 1
GUAGUAAUCU---------------AGUUCUAUAUUUU--GCUGGUUAAGUAAACAAUGAACUGAUUAGAAUGAUUUUCG-AGCUAUAAAAUCCCCAUUGGAUUGAAACACCUGAAAUCC
....(((((.---------------(((((.....(((--(((.....))))))....))))))))))....((((((.(-.(......(((((.....)))))......)).)))))). ( -18.80)
>consensus
_UAGUAAGCUUU_UAUC_UUC_A_GAUUUCUAUCUUUU_AUCUAUUUAAGUAGACAAUGAACGGAUUGAAAUGUUUUUCCCGGUUACAAAUUCUCCAUUGGAUUCAAACACCUCAAAUCC
...((((((...............................(((((....))))).............((((....))))..))))))................................. ( -0.82 =  -2.42 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:31 2006