Locus 9046

Sequence ID 3R_DroMel_CAF1
Location 24,195,096 – 24,195,203
Length 107
Max. P 0.964408
window14489

overview

Window 9

Location 24,195,096 – 24,195,203
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.02
Mean single sequence MFE -29.79
Consensus MFE -15.42
Energy contribution -18.40
Covariance contribution 2.97
Combinations/Pair 1.07
Mean z-score -2.49
Structure conservation index 0.52
SVM decision value 1.57
SVM RNA-class probability 0.964408
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24195096 107 - 27905053
GUAGUGCCAGUUUUGCAUUCGAAUGCUAAAGAUUUUCAAUUAAAACUACUUUGGCAAUCAACAU------AUGUGAGUGA--GCGGCAAAUGCAGCCAGCGACG-----ACUGGCAACAC
((..((((((((((((((((((.((((((((.................)))))))).)).((..------..))))))..--..(((.......))).)))).)-----)))))))..)) ( -31.83)
>DroPse_CAF1 19074 93 - 1
----------UUUUUUGGUUGAAUGCUAAAGAUUUUCAAUUAAAACUACUUUGGCAAUCAGCAU------AUGUGAGGCAUGGCCGCUCUUUCUC------UCU-----AGUUGCAACAC
----------.......(((((.((((((((.................)))))))).)))))..------..(((.(((...)))((.((.....------...-----))..))..))) ( -19.83)
>DroSec_CAF1 17933 106 - 1
GUAGUGCCAGUUCGCCAUUCGAAUGCUAAAGAUUUUCAAUUAAAA-UACUUUGGCAAUCAACAU------AUGUGAGUGA--GCGGCAAAUGCAGCCAGCGACG-----ACUGGCAACAC
((..((((((((((((((((((.(((((((((((((.....))))-).)))))))).)).((..------..))))))).--..(((.......))).))))..-----)))))))..)) ( -36.90)
>DroEre_CAF1 21062 107 - 1
GUAGUGCCAGUUUUGCAUUCGAAUGCUAAAGAUUUUCAAUUAAAACUACUUUGGCAAUCAGCAU------AUGUGAGCGG--GCGGCAAUUGCAGCCAGCGACU-----ACUGGCAACAC
((..(((((((.((((....((.((((((((.................)))))))).)).((..------......)).(--((.((....)).))).))))..-----)))))))..)) ( -34.13)
>DroYak_CAF1 19061 112 - 1
GUAGUGCCAGUUUUGCAUUCGAAUGCUAAAGAUUUUCAAUUAAAACUACUUUGGCAAUCAACAU------AUGUGAGUGA--GCGGCAAUUGCAGCCAGCGACUAGGCGACUGGCAACAC
((((((((.((....(((((((.((((((((.................)))))))).)).((..------..))))))).--))))).))))).(((((((......)).)))))..... ( -32.83)
>DroAna_CAF1 16738 102 - 1
GCA--GCCAUACUUCCAUCAGAUCGCUAAAGAUUUUCAAUUAAAACUACUUUGGCAAUCAGCAUACAUACAUGUGAGUGA--ACCGCUCUUACUG--------------GCUUGCAACAC
(((--((((...........(((.(((((((.................))))))).))).((((......))))(((((.--..)))))....))--------------)).)))..... ( -23.23)
>consensus
GUAGUGCCAGUUUUGCAUUCGAAUGCUAAAGAUUUUCAAUUAAAACUACUUUGGCAAUCAACAU______AUGUGAGUGA__GCGGCAAUUGCAGCCAGCGACU_____ACUGGCAACAC
.....((((((....(((((((.((((((((.................)))))))).)).((((......))))))))).....(((.......)))............))))))..... (-15.42 = -18.40 +   2.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:29 2006