Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,190,486 – 24,190,587 |
Length | 101 |
Max. P | 0.781286 |
Location | 24,190,486 – 24,190,587 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.52 |
Mean single sequence MFE | -28.71 |
Consensus MFE | -14.61 |
Energy contribution | -15.80 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.89 |
Structure conservation index | 0.51 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24190486 101 + 27905053 -AC--AACGCGGCGUAUGCUUGAUUUCUGUCUUG------CUGCCUCUUGACAGGACAACUACCACCACU--CCC-A-----AACGCCGACGUCAUGGCCUAAUCCUAUUAGGCCCGC-- -..--.(((((((((.((...(....)(((((((------(........).)))))))............--..)-)-----.)))))).)))...((((((((...))))))))...-- ( -29.90) >DroPse_CAF1 13831 81 + 1 -AC--AACGCGGCGUAUGCUUGAUUUCUGCCUUA------GUGCCUCUUGACAG------------------------------CGGCAGCGUCAGUGCCUAAUCCUAUUAGGCCCGCUU -..--...((((.....(((.(((..(((((...------((........))..------------------------------.))))).))))))(((((((...))))))))))).. ( -23.70) >DroSim_CAF1 17024 102 + 1 -AC--AACGCGGCGUAUGCUUGAUUUCUGUCUUG------CUGCCUCUUGACAGGACAUCUACCACCACU--CCCCA-----ACCGCCGACGUCAUGGCCUAAUCCUAUUAGGCCCGC-- -..--.((((((((..((...((((((((((..(------......)..))))))).)))..........--...))-----..))))).)))...((((((((...))))))))...-- ( -28.59) >DroEre_CAF1 16365 96 + 1 -ACACAACGCGGCGUAUGCUUGAUUUCUGUCCUG------AUGCCUCUUGACAGGACAUCUCCCAC---------------CAGCAGCGACGUCAGGGCCUAAUCCUAUUAGGCCCGC-- -.......(((((((.((((((.....(((((((------...........))))))).....)).---------------.))))...))))).(((((((((...)))))))))))-- ( -35.60) >DroYak_CAF1 14192 109 + 1 -AC--AACGCGGCGUAUGCUUGAUUUCUGUCUUG------CUGCCUCUUGACAGGACAUCUACCAACAGCAACACCAUCAGCAGCAGCGACGUCAUGGCCUAAUCCUAUUAGGCCCGC-- -..--...(((((((.((((.((((((((((..(------......)..))))))).)))........((..........))))))...)))))..((((((((...)))))))).))-- ( -31.90) >DroAna_CAF1 11797 91 + 1 CAC--AACGCGGCGUAUGCUUGAUUUCUGCCUCGAGCUUAGAGCCUCUUGACAACACA-------------------------GCAUCGACGUCAUGGCAUAAUCCUAUUAGGCCCGC-- ...--..((.(((.((.((((((........)))))).....(((...((((..(...-------------------------.....)..)))).)))..........)).))))).-- ( -22.60) >consensus _AC__AACGCGGCGUAUGCUUGAUUUCUGUCUUG______CUGCCUCUUGACAGGACAUCUACCAC________________AGCAGCGACGUCAUGGCCUAAUCCUAUUAGGCCCGC__ ........(((((((((.....))(((((((..................))))))).................................)))))..((((((((...)))))))).)).. (-14.61 = -15.80 + 1.19)
Location | 24,190,486 – 24,190,587 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.52 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -17.78 |
Energy contribution | -17.59 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -1.85 |
Structure conservation index | 0.51 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24190486 101 - 27905053 --GCGGGCCUAAUAGGAUUAGGCCAUGACGUCGGCGUU-----U-GGG--AGUGGUGGUAGUUGUCCUGUCAAGAGGCAG------CAAGACAGAAAUCAAGCAUACGCCGCGUU--GU- --...((((((((...))))))))(..(((.((((((.-----.-..(--..((((.....((((((((((....)))))------...)))))..))))..)..))))))))).--.)- ( -40.00) >DroPse_CAF1 13831 81 - 1 AAGCGGGCCUAAUAGGAUUAGGCACUGACGCUGCCG------------------------------CUGUCAAGAGGCAC------UAAGGCAGAAAUCAAGCAUACGCCGCGUU--GU- ..(((((((((((...)))))))..(((..(((((.------------------------------.((((....)))).------...)))))...)))........))))...--..- ( -28.80) >DroSim_CAF1 17024 102 - 1 --GCGGGCCUAAUAGGAUUAGGCCAUGACGUCGGCGGU-----UGGGG--AGUGGUGGUAGAUGUCCUGUCAAGAGGCAG------CAAGACAGAAAUCAAGCAUACGCCGCGUU--GU- --...((((((((...))))))))(..(((.(((((..-----....(--..((((......(((((((((....)))))------...))))...))))..)...)))))))).--.)- ( -37.20) >DroEre_CAF1 16365 96 - 1 --GCGGGCCUAAUAGGAUUAGGCCCUGACGUCGCUGCUG---------------GUGGGAGAUGUCCUGUCAAGAGGCAU------CAGGACAGAAAUCAAGCAUACGCCGCGUUGUGU- --..(((((((((...))))))))).(((((.((((((.---------------.(((....(((((((...........------)))))))....)))))))...)).)))))....- ( -36.40) >DroYak_CAF1 14192 109 - 1 --GCGGGCCUAAUAGGAUUAGGCCAUGACGUCGCUGCUGCUGAUGGUGUUGCUGUUGGUAGAUGUCCUGUCAAGAGGCAG------CAAGACAGAAAUCAAGCAUACGCCGCGUU--GU- --...((((((((...))))))))(..((((.((...(((((((.((.(((((((((..((.....))..))....))))------))).))....))).))))...)).)))).--.)- ( -40.90) >DroAna_CAF1 11797 91 - 1 --GCGGGCCUAAUAGGAUUAUGCCAUGACGUCGAUGC-------------------------UGUGUUGUCAAGAGGCUCUAAGCUCGAGGCAGAAAUCAAGCAUACGCCGCGUU--GUG --(((..((.....))....)))((..((((((((((-------------------------(...(((((..(((........)))..)))))......))))).))..)))).--.)) ( -25.50) >consensus __GCGGGCCUAAUAGGAUUAGGCCAUGACGUCGCCGCU________________GUGGUAGAUGUCCUGUCAAGAGGCAG______CAAGACAGAAAUCAAGCAUACGCCGCGUU__GU_ ..(((((((((((...)))))))...........................................(((((..................)))))..............))))........ (-17.78 = -17.59 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:23 2006