Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,190,187 – 24,190,307 |
Length | 120 |
Max. P | 0.975691 |
Location | 24,190,187 – 24,190,307 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -22.99 |
Energy contribution | -22.85 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.03 |
Mean z-score | -0.89 |
Structure conservation index | 0.98 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24190187 120 + 27905053 AAUGAAAAUCUUUUAUUCAUGAGGCUAUAAAAUUGCCCAAUUUUCAGGCCAUUAGCAAAAUUUACGCCUUUUUCUCUGCACGCAGCGCAUAGUGGCCAUUAAACACAGUCGCCUGCAUAA ..................(((((((...((((((....))))))..((((((((((((((........))))...(((....))).)).)))))))).............)))).))).. ( -23.30) >DroPse_CAF1 13493 120 + 1 AAUGAAAAUCUUUUAUUCAUGAGGCUAUAAAAUUGCCCAAUUUUCAGGCCAUUAGCAAAAUUUACGCCUUUUUCUCUGCACGCAGCGCAUAGUGGCCAUUAAGCACAGUCGCCUGCAUAA ..(((((((..........((.(((.........))))))))))))((((((((((((((........))))...(((....))).)).)))))))).....(((........))).... ( -24.10) >DroSec_CAF1 13083 120 + 1 AAUGAAAAUCUUUUAUUCAUGAGGCUAUAAAAUUGCCCAAUUUUCAGGCCAUUAGCAAAAUUUACGCCUUUUUCUCUGCACGCAGCGCAUAGUGGCCAUUAAACACAGUCGCUUGCAUAA ..(((((((..........((.(((.........))))))))))))((((((((((((((........))))...(((....))).)).))))))))....................... ( -22.10) >DroYak_CAF1 13911 120 + 1 AAUGAAAAUCUUUUAUUCAUGAGGCUAUAAAAUUGCCCAAUUUUCAGGCCAUUAGCAAAAUUUACGCCUUUUUCUCUGCACGCAGCGCAUAGUGGCCAUUAAACACAGUCGCCUGCAUAA ..................(((((((...((((((....))))))..((((((((((((((........))))...(((....))).)).)))))))).............)))).))).. ( -23.30) >DroAna_CAF1 11513 120 + 1 AAUGAAAAUCUUUUAUUCAUGAGGCUAUAAAAUUGCCCAAUUUUCAGGCCAUUAGCAAAAUUUACGCCUUUUUCUCUGCACGCAGCGCAUAGUGGCCAUUAAAUACAGUCGCCUGCAUAA ..................(((((((...((((((....))))))..((((((((((((((........))))...(((....))).)).)))))))).............)))).))).. ( -23.30) >DroPer_CAF1 13390 120 + 1 AAUGAAAAUCUUUUAUUCAUGAGGCUAUAAAAUUGCCCAAUUUUCAGGCCAUUAGCAAAAUUUACGCCUUUUUCUCUGCACGCAGCGCAUAGUGGCCAUUAAGCACAGUCGCCUGCAUAA ..(((((((..........((.(((.........))))))))))))((((((((((((((........))))...(((....))).)).)))))))).....(((........))).... ( -24.10) >consensus AAUGAAAAUCUUUUAUUCAUGAGGCUAUAAAAUUGCCCAAUUUUCAGGCCAUUAGCAAAAUUUACGCCUUUUUCUCUGCACGCAGCGCAUAGUGGCCAUUAAACACAGUCGCCUGCAUAA ..................(((((((...((((((....))))))..((((((((((((((........))))...(((....))).)).)))))))).............)))).))).. (-22.99 = -22.85 + -0.14)
Location | 24,190,187 – 24,190,307 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -29.67 |
Energy contribution | -29.79 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.38 |
Structure conservation index | 0.96 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24190187 120 - 27905053 UUAUGCAGGCGACUGUGUUUAAUGGCCACUAUGCGCUGCGUGCAGAGAAAAAGGCGUAAAUUUUGCUAAUGGCCUGAAAAUUGGGCAAUUUUAUAGCCUCAUGAAUAAAAGAUUUUCAUU ..((((((....)))))).....(((((((.(((((...))))).)).....((((.......))))..)))))((((((((((((.........))))...........)))))))).. ( -30.90) >DroPse_CAF1 13493 120 - 1 UUAUGCAGGCGACUGUGCUUAAUGGCCACUAUGCGCUGCGUGCAGAGAAAAAGGCGUAAAUUUUGCUAAUGGCCUGAAAAUUGGGCAAUUUUAUAGCCUCAUGAAUAAAAGAUUUUCAUU (((((.((((.....(((((((((((((((.(((((...))))).)).....((((.......))))..))))).....))))))))........)))))))))................ ( -33.12) >DroSec_CAF1 13083 120 - 1 UUAUGCAAGCGACUGUGUUUAAUGGCCACUAUGCGCUGCGUGCAGAGAAAAAGGCGUAAAUUUUGCUAAUGGCCUGAAAAUUGGGCAAUUUUAUAGCCUCAUGAAUAAAAGAUUUUCAUU ..(((((......))))).....(((((((.(((((...))))).)).....((((.......))))..)))))((((((((((((.........))))...........)))))))).. ( -25.60) >DroYak_CAF1 13911 120 - 1 UUAUGCAGGCGACUGUGUUUAAUGGCCACUAUGCGCUGCGUGCAGAGAAAAAGGCGUAAAUUUUGCUAAUGGCCUGAAAAUUGGGCAAUUUUAUAGCCUCAUGAAUAAAAGAUUUUCAUU ..((((((....)))))).....(((((((.(((((...))))).)).....((((.......))))..)))))((((((((((((.........))))...........)))))))).. ( -30.90) >DroAna_CAF1 11513 120 - 1 UUAUGCAGGCGACUGUAUUUAAUGGCCACUAUGCGCUGCGUGCAGAGAAAAAGGCGUAAAUUUUGCUAAUGGCCUGAAAAUUGGGCAAUUUUAUAGCCUCAUGAAUAAAAGAUUUUCAUU ..((((((....)))))).....(((((((.(((((...))))).)).....((((.......))))..)))))((((((((((((.........))))...........)))))))).. ( -31.90) >DroPer_CAF1 13390 120 - 1 UUAUGCAGGCGACUGUGCUUAAUGGCCACUAUGCGCUGCGUGCAGAGAAAAAGGCGUAAAUUUUGCUAAUGGCCUGAAAAUUGGGCAAUUUUAUAGCCUCAUGAAUAAAAGAUUUUCAUU (((((.((((.....(((((((((((((((.(((((...))))).)).....((((.......))))..))))).....))))))))........)))))))))................ ( -33.12) >consensus UUAUGCAGGCGACUGUGUUUAAUGGCCACUAUGCGCUGCGUGCAGAGAAAAAGGCGUAAAUUUUGCUAAUGGCCUGAAAAUUGGGCAAUUUUAUAGCCUCAUGAAUAAAAGAUUUUCAUU (((((.((((.....(((((((((((((((.(((((...))))).)).....((((.......))))..))))).....))))))))........)))))))))................ (-29.67 = -29.79 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:21 2006