Locus 9039

Sequence ID 3R_DroMel_CAF1
Location 24,186,380 – 24,186,493
Length 113
Max. P 0.630644
window14477

overview

Window 7

Location 24,186,380 – 24,186,493
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.46
Mean single sequence MFE -25.70
Consensus MFE -17.44
Energy contribution -17.75
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -1.32
Structure conservation index 0.68
SVM decision value 0.20
SVM RNA-class probability 0.630644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24186380 113 - 27905053
UUAAA-AAGGGUUAUGCGCGAGAGGCAAAAAGUUUUUCAUUAAGCUGCCAACGAUGAUG---AUGAUGGCGAAGGCGGUCUGUCCGGACCGUCCAAACC-GCUCGACAA--AAAAACCCA
.....-..(((((......(((((((.....))))))).(..((((((((.((......---.)).)))))..((((((((....))))))))......-)))..)...--...))))). ( -34.30)
>DroPse_CAF1 9272 101 - 1
UUAAA-AAGGGUUAUGCGCGAGAGGCAAAAAGUUUUUCAUUAAGCUGCCAACGAUGAUGCUGAUGAUGACGGAGGCGGUCGA-CAA---------------GAUGGAAA--AGAAGCUCA
.....-..(((((.(((.(....)))).....(((((((((..((((((..((.(.((.(....))).)))..))))))...-...---------------))))))))--)..))))). ( -23.80)
>DroEre_CAF1 12204 98 - 1
UUAAAAAAGGGUUAUGCGCGCGAGGCAAAAAGUUUUUCAUUAAGCUGCCAACGAUGAUG---AUGAUGGCGAAGGCGGUCUGACCG---------------UAUCUGA----AAAAACCU
........(((((.(((.(....))))......((((((.......((((.((......---.)).))))((..((((.....)))---------------).)))))----)))))))) ( -22.20)
>DroYak_CAF1 10058 101 - 1
UUAAA-AAGGGUUAUGCGCGCGAGGCAAAAAGUUUUUCAUUAAGCUGCCAACGAUGAUG---AUGAUGGCGAAGGCGGUCGGUCCG---------------CUCGAGAAAAAAAAAACCA
.....-...((((.(((.(....)))).....((((((.(..(((.(((..(......)---..(((.((....)).))))))..)---------------))..)))))))...)))). ( -25.40)
>DroAna_CAF1 7901 92 - 1
UUAAA-AAGGGUUAUGCGCGAGAGGCAAAAAGUUUUUCAUUAAGCUGCCAACGAUGAUG---GUGAUGGCGAAGGCGG--------------------CG-GUCGACAA---AAACCCCA
.....-..(((((.((((((((((((.....))))))).....((((((..((.(.((.---...)).)))..)))))--------------------).-).)).)).---.))))).. ( -26.10)
>DroPer_CAF1 9189 101 - 1
UUAAA-AAGGGUUAUGCGCGAGAGGCAAAAAGUUUUUCAUUAAGCUGCCAACGAUGAUGCUGAUGAUGAUGGAGGCGGUCGA-CAA---------------GAUGGAAA--AGAAACUCA
.....-..(((((.(((.(....)))).....(((((((((..((((((..(.((.((.(....))).)))..))))))...-...---------------))))))))--)..))))). ( -22.40)
>consensus
UUAAA_AAGGGUUAUGCGCGAGAGGCAAAAAGUUUUUCAUUAAGCUGCCAACGAUGAUG___AUGAUGGCGAAGGCGGUCGG_CCG_______________GACGAAAA__AAAAACCCA
........(((((......(((((((.....))))))).....((((((..((.(.((.......)).)))..))))))...................................))))). (-17.44 = -17.75 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:18 2006