| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,186,089 – 24,186,195 |
| Length | 106 |
| Max. P | 0.801027 |
| Location | 24,186,089 – 24,186,195 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.38 |
| Mean single sequence MFE | -34.04 |
| Consensus MFE | -20.80 |
| Energy contribution | -20.60 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.801027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24186089 106 + 27905053 -AAAAGUUUUUG--GCAGUUGACCCAACGGUUCAACG--------GUCCAACGGUGGGCGGUCCAAAUUCGCUUGUUUGCUGGGAAGCAAGCAAGCUUAUCAUUGAUUUUAUUGGCA -....(..((((--((.(((((((....)).))))).--------(((((....))))).).)))))..)(((((((((((....)))))))))))..................... ( -35.50) >DroSec_CAF1 9047 98 + 1 -AAAAGUUUUUG--GCAGUUGACCCAACGGUC----------------CAACGGUGGGCGGUCCAAAUUCGCUUGUUUGCUGGGAAGCAAGCAAGCUUAUCAUUGAUUUUAUUGGCA -....(..((((--(...(((.((((.((...----------------...)).))))))).)))))..)(((((((((((....)))))))))))..................... ( -31.60) >DroSim_CAF1 12632 114 + 1 -AAAAGUUUUUG--GCAGUUGACCCAACGGUCCAACGGUCCGACGGUCCAACGGUGGGCGGUCCAAAUUCGCUUGUUUGCUGGGAAGCAAGCAAGCUUAUCAUUGAUUUUAUUGGCA -.((((((..((--(..(((((((....))).)))).....(((.(((((....))))).))).......(((((((((((....)))))))))))...)))..))))))....... ( -38.80) >DroEre_CAF1 11938 99 + 1 CAAAAGUUUUUGGGGCCGUUGGUUU--UG----------------GGCCAACGGUGGGCGGUCCAAAUUCGCUUGUUUGCUGCGGAGCAAGCAAGCUUAUCAUUGAUUUUAUUGGCA ..((((((..(((((((((((((..--..----------------.)))))).(....))))))......(((((((((((....)))))))))))....))..))))))....... ( -36.40) >DroYak_CAF1 9814 96 + 1 -AAAAGUUUUUC--UCAGUUGGUUU--UC----------------GGCCAACGGUGGGCGGUCCAAAUUUCCUUGUUUGCUGGGUGGCAAGCAAGCUUAUCAUUGAUUUUAUUGGCA -.((((((....--...((((((..--..----------------.))))))(((((((((.........))(((((((((....))))))))))))))))...))))))....... ( -27.90) >consensus _AAAAGUUUUUG__GCAGUUGACCCAACGGU______________GGCCAACGGUGGGCGGUCCAAAUUCGCUUGUUUGCUGGGAAGCAAGCAAGCUUAUCAUUGAUUUUAUUGGCA .................((..(................................(((.....))).....(((((((((((....)))))))))))...............)..)). (-20.80 = -20.60 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:17 2006