Locus 9037

Sequence ID 3R_DroMel_CAF1
Location 24,185,032 – 24,185,132
Length 100
Max. P 0.846304
window14475

overview

Window 5

Location 24,185,032 – 24,185,132
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.21
Mean single sequence MFE -34.07
Consensus MFE -18.59
Energy contribution -17.95
Covariance contribution -0.64
Combinations/Pair 1.14
Mean z-score -1.99
Structure conservation index 0.55
SVM decision value 0.77
SVM RNA-class probability 0.846304
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24185032 100 - 27905053
AGUGCUAGGACACGGAAGCACA-----------UGAGAGCAUUUGCUGCUUAUUCUAAGUUUGAUUCAGUGUCGUCGCAACAGCUCAAGGCUGUUUGGUC-C-UGGCCACAAA-------
.((((((((((.(((..((((.-----------(((((((....)))(((((...)))))....))))))))..))).((((((.....))))))..)))-)-))).)))...------- ( -35.40)
>DroPse_CAF1 8146 118 - 1
AG--CUACUACACGGAAGCACAUUGUCAAUGGAAAGGAGCAAAUUCUGCUUAUUCUAAGUUUGAUUCAGUGUCGCCUCAACAGCUCAAGGCUGUUUGGGUCCCCAACUCCAAGUGAGUGA
..--.((((.((((((.((((...((((((((((..(((((.....))))).)))))...)))))...)))).((((.((((((.....)))))).)))).......)))..))))))). ( -34.70)
>DroSec_CAF1 8038 100 - 1
AGUUCCAGGACACGGAAGCACA-----------UGAGAGCAUUUGCUGCUUAUUCUAAGUUUGAUUCAGUGUCGUCGCAACAGCUCAAGGCUGUUUGGUC-C-UGGCCACAAA-------
.((.(((((((.(((..((((.-----------(((((((....)))(((((...)))))....))))))))..))).((((((.....))))))..)))-)-)))..))...------- ( -33.00)
>DroYak_CAF1 8779 100 - 1
AGCGCCAGGACACGGAAGCACA-----------UGAGAGCAUUUGCUGCUUAUUCUAAGUUUGAUUCAGUGUCGCUGCAACAGCUCAAGGCUGUUUGGUG-C-UGGCCACAAA-------
.(.((((((((((.((((((.(-----------((....))).))))(((((...))))).....)).)))))((((.((((((.....)))))))))).-)-))))).....------- ( -32.60)
>DroAna_CAF1 6691 111 - 1
AAUGCCAGAACACGGAAGCACAUUGUCAAUGGGUGAGAGCAUUUGAUGCUUAUUCUAAGUUUGAUUCAGUGUCGUCCCAACAGCUCAAGGCUGUUUGGGC-C-UGCUCUUAAA-------
....(((..((((....).....)))...))).((((((((...((((((...((.......))...))))))((((.((((((.....)))))).))))-.-))))))))..------- ( -34.00)
>DroPer_CAF1 8058 118 - 1
AG--CUACUACACGGAAGCACAUUGUCAAUGGAAAGGAGCAAAUUCUGCUUAUUCUAAGUUUGAUUCAGUGUCGCCUCAACAGCUCAAGGCUGUUUGGGUCCCCAACUCCAAGUGAGUGA
..--.((((.((((((.((((...((((((((((..(((((.....))))).)))))...)))))...)))).((((.((((((.....)))))).)))).......)))..))))))). ( -34.70)
>consensus
AGUGCCAGGACACGGAAGCACA___________UGAGAGCAUUUGCUGCUUAUUCUAAGUUUGAUUCAGUGUCGCCGCAACAGCUCAAGGCUGUUUGGGC_C_UGGCCACAAA_______
....(((......((..((((...............(((((.....)))))..((.......))....))))..))..((((((.....)))))))))...................... (-18.59 = -17.95 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:16 2006