Locus 9036

Sequence ID 3R_DroMel_CAF1
Location 24,184,428 – 24,184,533
Length 105
Max. P 0.811690
window14474

overview

Window 4

Location 24,184,428 – 24,184,533
Length 105
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 83.16
Mean single sequence MFE -29.07
Consensus MFE -22.12
Energy contribution -23.15
Covariance contribution 1.03
Combinations/Pair 1.04
Mean z-score -2.29
Structure conservation index 0.76
SVM decision value 0.65
SVM RNA-class probability 0.811690
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24184428 105 + 27905053
--------GUACCCUUUCGGCCCAACAUGCCCCUCCACGCACACGGUACUUCGGCAGCAACAAUUUGCAGAAGUUUUCAACUUUCGGCUCGCAAUUGUUGUUGCCACUGUGCU
--------..........(((.......))).......(((((.((....))(((((((((((((.((.(((((.....)))))..))....)))))))))))))..))))). ( -31.50)
>DroSec_CAF1 7434 104 + 1
--------GUACCCUUCGUGC-CAACAUGCCCCUCCACGCACACGGUACUUCGGCAGCAACAAUUUGCAGAAGUUUUCAACUUUCGGCUCGCAAUUGUUGUUACCACUGUGCU
--------((((.....((((-(....(((........)))...)))))...((.((((((((((.((.(((((.....)))))..))....)))))))))).))...)))). ( -27.40)
>DroSim_CAF1 6459 105 + 1
--------GUACCCUUCGCGCCCAACAUGCCCCUCCACGCACACGGUACUUCGGCAGAAACAAUUUGCAGAAGUUUUCAACUUUCGGCUCGCAAUUGUUGUUGCCACUGUGCU
--------(((((....(((.................)))....)))))...(((((.(((((((.((.(((((.....)))))..))....))))))).)))))........ ( -24.43)
>DroEre_CAF1 10304 105 + 1
--------GCACCCUUCGGGCCCAACAUGCCCCUCCACGCACACGGUACCUCGGCAGCAACAAUUUGCAGAAGUUUUCAACUUUCGGCUCGCAAUUGUUGUUGCCACUGUGCU
--------.........((((.......))))......(((((.(....)..(((((((((((((.((.(((((.....)))))..))....)))))))))))))..))))). ( -34.60)
>DroYak_CAF1 8188 92 + 1
---------------------ACAACAUACCCCUCCACGCACACGGUACUUUGGCAGCAACAAUUUGCAGAAGUUUUCAACUUUCGGCUCGCAAUUGUUGUUGCCACUGUGCU
---------------------.......................(((((..((((((((((((((.((.(((((.....)))))..))....))))))))))))))..))))) ( -29.80)
>DroAna_CAF1 6051 112 + 1
UCCACCGUGUUCCUCCUGAGCUCAGCAUACC-CGACACGCGCACGCUACUUUGGCAACAACAAUUUGCAGAAGUUUUCAACUUUUAGCUCGUUAUUGUUGGUGCCUCGAUUCC
.....((((((....(((....)))......-.)))))).(((((((.....)))..(((((((..((((((((.....)))))).)).....)))))))))))......... ( -26.70)
>consensus
________GUACCCUUCGGGCCCAACAUGCCCCUCCACGCACACGGUACUUCGGCAGCAACAAUUUGCAGAAGUUUUCAACUUUCGGCUCGCAAUUGUUGUUGCCACUGUGCU
............................................(((((...(((((((((((((.((.(((((.....)))))..))....)))))))))))))...))))) (-22.12 = -23.15 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:15 2006