Locus 9034

Sequence ID 3R_DroMel_CAF1
Location 24,181,782 – 24,181,884
Length 102
Max. P 0.694102
window14470

overview

Window 0

Location 24,181,782 – 24,181,884
Length 102
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 90.17
Mean single sequence MFE -28.92
Consensus MFE -23.26
Energy contribution -23.62
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.53
Structure conservation index 0.80
SVM decision value 0.34
SVM RNA-class probability 0.694102
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24181782 102 - 27905053
--UUGCCUAAAAUUAAAGCCCAUUUUAAGCUAUAGGCAAUAUUUUUCCGAGUGUGGUCACUUGCAGAGCUGCCUGACUUGCAAGUUGCAGCAACGAAAGUGGAC
--(((((((...((((((....))))))....)))))))......(((...(((.((.((((((((..(.....)..)))))))).)).)))((....))))). ( -28.60)
>DroSec_CAF1 4820 102 - 1
--UUGCUUAAAAUUAAAGCCAAAUCUAAGCUAUAGGCGAUAUUUUUGCGAGUGUGGUCACUUGCAGAGCUGCCUGACUUGCAAGUUGCAGCAACGAAAGUGGAC
--..((((.......))))....(((..(((.((((((....(((((((((((....))))))))))).))))))....((.....))))).((....))))). ( -29.40)
>DroSim_CAF1 3839 102 - 1
--UUGCUUAAAAUUAAAGACCAAUCUAAGCUAUAGGCGAUAUUUUUGCGAGUGUGGUCACUUGCAGAGCUGCCUGACUUGCAAGUUGCAGCAACGAAAGUGGAC
--(((((((.......(((....)))......)))))))....((((((((((....))))))))))(((((..((((....))))))))).((....)).... ( -29.62)
>DroEre_CAF1 7777 101 - 1
--UUGCCUA-AAUUAAAGCCCCAUCUAAGCGGUAGACGCUUUUUUUCCGAGUGUGGUCACUUGCAGAGCUGCCUGACUUGCAAGUUGCAGCUACGAAAGUGGAC
--.......-..........((((..(((((.....)))))..((((((((((....))))))...((((((..((((....))))))))))..)))))))).. ( -26.50)
>DroYak_CAF1 5401 103 - 1
UAUUGCCUA-AAUUAAAGCCCCAACUAAGCUAUUGAUAUUAUUUUUGCGAGUGUGGUCACUUGCAGAGCUGCCUGACUUGCAAGUUGCAGCUACGAAAGUGGGC
.........-.......((((.......................(((((((((....)))))))))((((((..((((....))))))))))((....)))))) ( -30.50)
>consensus
__UUGCCUAAAAUUAAAGCCCAAUCUAAGCUAUAGGCGAUAUUUUUGCGAGUGUGGUCACUUGCAGAGCUGCCUGACUUGCAAGUUGCAGCAACGAAAGUGGAC
...((((((...(((..........)))....)))))).....((((((((((....))))))))))(((((..((((....))))))))).((....)).... (-23.26 = -23.62 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:12 2006