Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,181,599 – 24,181,708 |
Length | 109 |
Max. P | 0.766849 |
Location | 24,181,599 – 24,181,708 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.98 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -15.33 |
Energy contribution | -15.30 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.12 |
Mean z-score | -1.19 |
Structure conservation index | 0.76 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24181599 109 + 27905053 UUCGGCAUUGUACACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGCC-------CCGA---CUUACCGACCAACCAACAGCAAUACA- ...(((..((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))...)))-------....---..........................- ( -19.60) >DroPse_CAF1 4087 102 + 1 UUCGGCAUUGUACAUGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACAUGCCCAUGCCCCCGAAAACCUACCUAC------------------ ...(((((((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).)))).))))).......................------------------ ( -20.00) >DroEre_CAF1 7614 89 + 1 CUCGGCAUUGUACACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGC---------------------CACC----------ACUACAU ...(((..((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))...))---------------------)...----------....... ( -20.50) >DroYak_CAF1 5222 102 + 1 CUCGGCAUUGUGCACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGACC-----CCCCGA---CUUACCCACC----------GAUACAU .((((....(((((((((.(((...((((((.....(((((....)))))..))))))..))))))))..)))).....-----..))))---..........----------....... ( -19.00) >DroAna_CAF1 3418 93 + 1 UUCGGCAGUGUACAUGAAAUUGUUAUAAAAAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGCA------AACGA---CUUUCCGGG------------------ ...(.(((((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))))).).------..((.---.....))..------------------ ( -22.60) >DroPer_CAF1 4066 102 + 1 UUCGGCAUUGUACAUGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACAUGCCCAUGCCCCCGAAAACCUACCUAC------------------ ...(((((((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).)))).))))).......................------------------ ( -20.00) >consensus UUCGGCAUUGUACACGAAAUUGUUAUAAAGAGCUAACCGGAUAUUUUCGGAAUUUUUAAUUAAUUCGUCUGCACUGGCC______CCCGA___CUUACCCAC__________________ ...(((..((((.(((((.(((...((((((.....(((((....)))))..))))))..)))))))).))))...)))......................................... (-15.33 = -15.30 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:11 2006