Locus 9032

Sequence ID 3R_DroMel_CAF1
Location 24,181,295 – 24,181,397
Length 102
Max. P 0.931967
window14468

overview

Window 8

Location 24,181,295 – 24,181,397
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.96
Mean single sequence MFE -29.12
Consensus MFE -15.26
Energy contribution -15.09
Covariance contribution -0.16
Combinations/Pair 1.29
Mean z-score -2.60
Structure conservation index 0.52
SVM decision value 1.22
SVM RNA-class probability 0.931967
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24181295 102 + 27905053
UCCGGGUUGUACCCUCAAUUAGAGCAUAAAUAUCAACUAUUGCGCAUACGACCCGUACACUCUGCACAGCGCCUGCCAUUGUGCAUAUAUGCGUA--U------GUAUAU----------
..(((((((((..(.((((..((.........))....)))).)..))))))))).......((((((((....))...)))))).((((((...--.------))))))---------- ( -24.40)
>DroSec_CAF1 4329 102 + 1
UCCGGGUUGUACCCUCAAUUAGAGCAUAAAUAUCAACUAUUGCUUAUACGACCCGUACGCUCUGCACUGGGCCUGCCAUUGUGCAUAUAUGCGUA--U------GUAUAU----------
...((((((((..........(((((..............))))).))))))))((((((..(((((..((....))...))))).....)))))--)------......---------- ( -30.04)
>DroSim_CAF1 3348 102 + 1
UCCGGGUUGUACCCUCAAUUAGAGCAUAAAUAUCAACUAUUGCGUAUACGACCCGUACGCUCUGCACUGCGCCUGCCAUUGUGCAUAUAUGCGUA--U------GUAUAU----------
...((((((((..(.((((..((.........))....)))).)..))))))))((((((..(((((.((....))....))))).....)))))--)------......---------- ( -28.20)
>DroEre_CAF1 7312 100 + 1
UC-GGGUUGUACCCUCAAUUAGAGCAUAAAUAGCAACUAUUGCGUAUACGACCCGUACACUGU-------GCAUGCCAUUGUGCAUGUGUGCGUA--UGUACGAGUAUAU----------
..-((((((((..(.((((....((.......))....)))).)..))))))))((((((.((-------((((......))))))))))))..(--((((....)))))---------- ( -32.90)
>DroYak_CAF1 4904 105 + 1
UCCGGGUUGUACCCUCAAUUAGAGCAUAAAUAUCAACUAUUGCGUAUACGACCCGUACACUGCU-----CGCUUGCCAUUGUACAUAUAUGCGUAUAUGUGCGAGUGUAU----------
..(((((((((..(.((((..((.........))....)))).)..)))))))))(((((.((.-----.....))..(((((((((((....)))))))))))))))).---------- ( -32.50)
>DroAna_CAF1 3089 103 + 1
AUCAGGUCGUACCCCCAAUUAGAGAAUAAAUACCAAAUAUUGCGUAUACGGCCCGUACA---------GUGCCCUCCAUUGUUCAUAUAUGCAUA--C------GUACUUGUAUGCAUGC
....(((((((..(.((((...................)))).)..))))))).(.(((---------(((.....)))))).)...((((((((--(------(....)))))))))). ( -26.71)
>consensus
UCCGGGUUGUACCCUCAAUUAGAGCAUAAAUAUCAACUAUUGCGUAUACGACCCGUACACUCUG____GCGCCUGCCAUUGUGCAUAUAUGCGUA__U______GUAUAU__________
...((((((((..(.((((...................)))).)..))))))))(((((....................)))))..((((((............)))))).......... (-15.26 = -15.09 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:10 2006