Locus 9030

Sequence ID 3R_DroMel_CAF1
Location 24,180,372 – 24,180,467
Length 95
Max. P 0.843395
window14465

overview

Window 5

Location 24,180,372 – 24,180,467
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.80
Mean single sequence MFE -26.90
Consensus MFE -18.80
Energy contribution -18.97
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.70
SVM decision value 0.76
SVM RNA-class probability 0.843395
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24180372 95 - 27905053
---CACGGAC---GAACCCAC----------------AUCGCCAGUGAGAUAGUCCAAUGCCCUCGGGGUAUAUUUUUCGCCACUUUCGC---UACGGCCAAAAGUGUUGACUGUCUUUG
---(((((.(---((......----------------.))))).)))((((((((..((((((...)))))).........((((((.((---....))..))))))..))))))))... ( -30.10)
>DroPse_CAF1 2588 88 - 1
---GACCGAC------UGC--------------------AGACAG--UGAUAGUCCAAUGCCCUUGGGGUAUAUU-UUUGCCACUUUCGCCGCCCCGGCCAAAAGUGUUGACUGUCUUUG
---.....((------((.--------------------...)))--)(((((((..((((((...))))))...-.....((((((.((((...))))..))))))..))))))).... ( -26.90)
>DroEre_CAF1 6434 73 - 1
---CACG----------------------------------------AGAUAGUCCAAUGCCCUCGGGGUAUAUU-UUCGCCACUUUCGC---UACGGCCAAAAGUGUUGACUGUCUUUG
---...(----------------------------------------((((((((..((((((...))))))...-.....((((((.((---....))..))))))..))))))))).. ( -25.20)
>DroYak_CAF1 3997 113 - 1
---CAUGGACGACGAACCCACAUCGCCACAUCGCCACAUCGCCAGUGUGAUAGUCCAAUGCCCUCGGGGUAUAUU-UUCGCCACUUUCGC---UCCGGCCAAAAGUGUUGACUGUCUUUG
---..(((((..(((.......))).(((((.((......))..)))))...)))))((((((...))))))...-.(((.((((((.((---....))..)))))).)))......... ( -26.80)
>DroAna_CAF1 2170 95 - 1
GCGAAUGAGC---GAACCCAC----------------AUCGAC--UGUGAUAGUCCAAUGCCCUCGGGGUAUAUUUUUCGCCACUUUCGC---CAUGGCCA-AAGUGUUGACUGUCUUUG
((......))---........----------------......--...(((((((..((((((...)))))).........((((((.((---....)).)-)))))..))))))).... ( -25.50)
>DroPer_CAF1 2575 88 - 1
---GACCGAC------UGC--------------------AGACAG--UGAUAGUCCAAUGCCCUUGGGGUAUAUU-UUUGCCACUUUCGCCGCCCCGGCCAAAAGUGUUGACUGUCUUUG
---.....((------((.--------------------...)))--)(((((((..((((((...))))))...-.....((((((.((((...))))..))))))..))))))).... ( -26.90)
>consensus
___CACGGAC______CCC____________________CGACAG__UGAUAGUCCAAUGCCCUCGGGGUAUAUU_UUCGCCACUUUCGC___CACGGCCAAAAGUGUUGACUGUCUUUG
................................................(((((((..((((((...)))))).........((((((.((.......))..))))))..))))))).... (-18.80 = -18.97 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:08 2006