Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,043,676 – 3,043,783 |
Length | 107 |
Max. P | 0.539215 |
Location | 3,043,676 – 3,043,783 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.94 |
Mean single sequence MFE | -31.79 |
Consensus MFE | -19.19 |
Energy contribution | -18.33 |
Covariance contribution | -0.85 |
Combinations/Pair | 1.46 |
Mean z-score | -1.48 |
Structure conservation index | 0.60 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3043676 107 - 27905053 GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUUAUAGUUGAGCUUCUGCCCUUUAAGGUAAGCUCGGCUUCGUUUAUUU-GUUAAAGG .((((((((((......((....)))))))))))).......((((((.((....(((((((((..((((......))))))))))))).........)-).)))))) ( -32.52) >DroSec_CAF1 30664 107 - 1 GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUUUGCCCUUUAAGGUAAGCUCGGCUACGCUUCUAU-GUCAAAGG .((((((((((......((....)))))))))))).......((((((.((((.((((((((((..((((......)))))))))))))).).....))-).)))))) ( -37.50) >DroSim_CAF1 30999 107 - 1 GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUCUGCCCUUUAAGGUAAGCUCGGCUAUGCUAAUUU-GUUAAAGA .((((((((((......((....))))))))))))........(((((.((.((((((((((((..((((......))))))))))))))))......)-).))))). ( -35.20) >DroEre_CAF1 31861 107 - 1 GCAUUGUGGCUUACACGGCGUCAGUGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUCUGCCCGUUAAGGUAAGCGCGUAUACGCUUAUUU-GUCAAAGG .....(((.....)))(((......(((((....(((((....((.((....)).))..)))))..)))))....(((((((((......)))))))))-)))..... ( -31.10) >DroWil_CAF1 42089 108 - 1 GCUUUGUGGCCAUUAUAGCCUCAAUAGGUGUAAUAGCCUUGAUUUUCAUUAUUAUCAUAGAGCUUUUGCCGGCCAAGGUGAGUUUGGAUAUCUUCAAUUUUGUAACUG ((((..(((((......((((....))))((((.(((((((((..........)))).)).))).)))).)))))....))))(((((....)))))........... ( -23.80) >DroYak_CAF1 32406 107 - 1 GCAUUGUGUCUUACACGGUGUCUGUGGGCAUAGUGGCUCUCACAUUUGUCAUCAUAGUUGAGCUUCUGCCCUUAAAGGUAAGCUCGGGUAUGCUUAUUU-CUCAAAGG ((((((((.....))))))))..((((((((((((((..........))))).....(((((((..((((......))))))))))).)))))))))..-........ ( -30.60) >consensus GCAUUGUGUCCUUCACGGCGUCAGCGGGCAUAGUGGCUCUUACCUUUGUCAUCAUAGUUGAGCUUCUGCCCUUUAAGGUAAGCUCGGCUACGCUUAUUU_GUCAAAGG ((..((((.....))))))......(((((....(((((..((...((....))..)).)))))..)))))....((((((((........))))))))......... (-19.19 = -18.33 + -0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:03 2006