Locus 9028

Sequence ID 3R_DroMel_CAF1
Location 24,176,539 – 24,176,642
Length 103
Max. P 0.864349
window14461 window14462

overview

Window 1

Location 24,176,539 – 24,176,642
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 94.82
Mean single sequence MFE -24.09
Consensus MFE -22.36
Energy contribution -22.36
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.93
SVM decision value 0.06
SVM RNA-class probability 0.564004
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24176539 103 + 27905053
CCCUGCCCUGUUGUCUGCGCAACACCAUAGUUCAUUCGAAUUUCCACCUCAAAACAAAUGAACUGAUAAGUGUUGGCCGCACCAAACAAGGCGAAACAAUAGU
...((((.((((...((((((((((..(((((((((.(................).)))))))))....))))))..))))...)))).)))).......... ( -26.89)
>DroSec_CAF1 17054 103 + 1
CCCUGUCCUGUUGGCCAUGCAACACCAUAGUUCAUUCGAAUUUUCACCUCAAAACAAAUGAACUGAUAAGUGUUGGCCGGAGCAAACAAGGCGAAACAAUAGU
..((((..((((.(((.((((((((..(((((((((.(..((((......))))).)))))))))....))))))((....))...)).)))..)))))))). ( -22.70)
>DroSim_CAF1 17047 103 + 1
CCCUGUCCUGUUGGCCAUGCAACACCAUAGUUCAUUCGAAUUUCCACCUCAAAACAAAUGAACUGAUAAGUGUUGGCCGGAGCAAACAAGGCGAAACAAUAGU
..((((..((((.(((.((((((((..(((((((((.(................).)))))))))....))))))((....))...)).)))..)))))))). ( -22.69)
>consensus
CCCUGUCCUGUUGGCCAUGCAACACCAUAGUUCAUUCGAAUUUCCACCUCAAAACAAAUGAACUGAUAAGUGUUGGCCGGAGCAAACAAGGCGAAACAAUAGU
.......((((((......((((((..(((((((((.(................).)))))))))....))))))(((...........)))....)))))). (-22.36 = -22.36 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 24,176,539 – 24,176,642
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -34.67
Consensus MFE -29.39
Energy contribution -29.50
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.76
Structure conservation index 0.85
SVM decision value 0.84
SVM RNA-class probability 0.864349
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24176539 103 - 27905053
ACUAUUGUUUCGCCUUGUUUGGUGCGGCCAACACUUAUCAGUUCAUUUGUUUUGAGGUGGAAAUUCGAAUGAACUAUGGUGUUGCGCAGACAACAGGGCAGGG
...........((((((((.(.((((..(((((((....((((((((((..((........))..))))))))))..)))))))))))..))))))))).... ( -37.40)
>DroSec_CAF1 17054 103 - 1
ACUAUUGUUUCGCCUUGUUUGCUCCGGCCAACACUUAUCAGUUCAUUUGUUUUGAGGUGAAAAUUCGAAUGAACUAUGGUGUUGCAUGGCCAACAGGACAGGG
............((((((((.....((((((((((....((((((((((..((........))..))))))))))..)))))....)))))....)))))))) ( -33.30)
>DroSim_CAF1 17047 103 - 1
ACUAUUGUUUCGCCUUGUUUGCUCCGGCCAACACUUAUCAGUUCAUUUGUUUUGAGGUGGAAAUUCGAAUGAACUAUGGUGUUGCAUGGCCAACAGGACAGGG
............((((((((.....((((((((((....((((((((((..((........))..))))))))))..)))))....)))))....)))))))) ( -33.30)
>consensus
ACUAUUGUUUCGCCUUGUUUGCUCCGGCCAACACUUAUCAGUUCAUUUGUUUUGAGGUGGAAAUUCGAAUGAACUAUGGUGUUGCAUGGCCAACAGGACAGGG
............((((((((.....((((((((((....((((((((((..((........))..))))))))))..)))))))....)))....)))))))) (-29.39 = -29.50 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:05 2006