Locus 9027

Sequence ID 3R_DroMel_CAF1
Location 24,175,865 – 24,175,974
Length 109
Max. P 0.836397
window14460

overview

Window 0

Location 24,175,865 – 24,175,974
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.39
Mean single sequence MFE -24.30
Consensus MFE -19.04
Energy contribution -19.04
Covariance contribution -0.00
Combinations/Pair 1.08
Mean z-score -1.83
Structure conservation index 0.78
SVM decision value 0.73
SVM RNA-class probability 0.836397
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24175865 109 - 27905053
C---------UCAUGCUGCUCGGUGGUUGAUUUUCCGCCCCGAGCGUGUUUUCAUAUUUGCUUCUGUCAUCAUUUAAUGAGAGAU--AUUUUAUUUCCCGUCUCAUAUUUAUUGGGAUAU
.---------....((.((((((.(((.(.....).)))))))))(((....)))....)).(((.((((......)))).))).--............((((((.......)))))).. ( -27.90)
>DroSec_CAF1 16379 111 - 1
C---------UCCUGCUGCUCGGUGGUUGAUUUUCCGCCUCGGGCGUGUUUUCAUAUUUGCUUCUGUCAUCAUUUAAUGAGAGAUAUAUUUUAUUUCCCGUCUCAUAUUUAUUGGAAUAU
.---------(((........(((((........))))).((((.(((....))).......(((.((((......)))).)))............)))).............))).... ( -21.70)
>DroSim_CAF1 16374 111 - 1
C---------UCCUGCUGCUCGGUGGUUGAUUUUCCGCCUCGGGCGUGUUUUCAUAUUUGCUUCUGUCAUCAUUUAAUGAGAGAUAUAUUUUAUUUCCCGUCUCAUAUUUAUUGGGAUAU
.---------....((.(((((((((........)))))..))))(((....)))....)).(((.((((......)))).)))...............((((((.......)))))).. ( -24.20)
>DroEre_CAF1 9825 106 - 1
------------CUCCUACACGGCGGAUGAUUUUCCGCCCCGAGCGUGUUUUCAUAUUUGCUUCUGUCAUCAUUUAAUGAAAGAU--AUUUUAUUUCCCGUCUCAUAUUUAUUGGGAUAU
------------.(((((...((((((......))))))..(((((((....))).......(((.((((......)))).))).--............).)))........)))))... ( -23.10)
>DroYak_CAF1 10080 118 - 1
CCACCAUUUUUACUCCCACUCGGUGGAUGAUUUUCCGCCGCGAGCGUGUUUUCAUAUUUGCUUCUGUCAUCAUUUAAUGAGAGAU--AUUUUAUUUCCCGUCUCAUAUUUAUUGGAAUAU
...(((...............((((((......))))))(((((..((....))..))))).(((.((((......)))).))).--.........................)))..... ( -24.60)
>consensus
C_________UCCUGCUGCUCGGUGGUUGAUUUUCCGCCCCGAGCGUGUUUUCAUAUUUGCUUCUGUCAUCAUUUAAUGAGAGAU__AUUUUAUUUCCCGUCUCAUAUUUAUUGGGAUAU
.....................(((((........)))))...((((.((......)).))))(((.((((......)))).)))...............((((((.......)))))).. (-19.04 = -19.04 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:03 2006