Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,174,420 – 24,174,524 |
Length | 104 |
Max. P | 0.928959 |
Location | 24,174,420 – 24,174,524 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.49 |
Mean single sequence MFE | -40.68 |
Consensus MFE | -26.96 |
Energy contribution | -29.96 |
Covariance contribution | 3.00 |
Combinations/Pair | 1.20 |
Mean z-score | -2.50 |
Structure conservation index | 0.66 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24174420 104 + 27905053 --AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGGGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCGUGAGUUUAAUCGAAUUCGAGCAGA --...(((((((((((..(((((..((((....).(..(((((((.....)))))))..)))).)))))..)))))))))))(((((((....)))))))...... ( -43.10) >DroSec_CAF1 14990 104 + 1 --AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGUGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCAUGAGUUUAAUCGAAUUCGAGCAGA --..((((((((((((..(((((..(((((((((((.........))))....))))...))).)))))..))))))))))..((((((....))))))))..... ( -43.20) >DroSim_CAF1 14917 104 + 1 --AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGGGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCGUGAGUUUAAUCGAAUUCGAGCAGA --...(((((((((((..(((((..((((....).(..(((((((.....)))))))..)))).)))))..)))))))))))(((((((....)))))))...... ( -43.10) >DroEre_CAF1 8315 106 + 1 CGCCUCGUUUCAGUUGCGGCCCGUUGAUGGCUCCACCUGGUCGAUGGGGGAUUGCUUUUGGAGCUGGGCAGCCGCUGGAGCGUGAGUUUAAUCGAAUUUGAGCAGA ...(.(((((((((.((.((((......(((((((...((.((((.....))))))..))))))))))).)).))))))))).).((((((......))))))... ( -40.60) >DroYak_CAF1 8647 93 + 1 CGCCUCGUUUCAGUUGCGGCCCGUUGAUGGCUCCACUUGGUCGUUGGGGGACUGCGGCUAG------U-------GAGAGCGUGAGUUUAAUCGAAUUUAAUCAGA (((((((....(((((((((((.(..((((((......))))))..)))).))))))))..------)-------))).)))(((((((....)))))))...... ( -33.40) >consensus __AAUCGCUUCAGUUGUGGCCCGUUGAUGGCUCCACUUGGUCGAUGGGGGAUUGGCUUUGGUCUUGGGCUGCAGCUGGAGCGUGAGUUUAAUCGAAUUCGAGCAGA .....(((((((((((((((((.....(((((......)))))....((((((......)))))))))))))))))))))))(((((((....)))))))...... (-26.96 = -29.96 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:01 2006