| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,173,899 – 24,174,013 |
| Length | 114 |
| Max. P | 0.722324 |
| Location | 24,173,899 – 24,174,013 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.45 |
| Mean single sequence MFE | -33.26 |
| Consensus MFE | -24.06 |
| Energy contribution | -24.94 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24173899 114 + 27905053 AA-AGCUGCUUCAUAAUUACCAUAUUUUCAAAUUACCAUUGG-----CCAGGGCCAUGGCCAACAUUUUCCUUUCCAUUCGGCCCGCGGCCAUAAAAGCUAAUUGUAUGCGUGCGUGGCU ..-(((..(..(((.........................(((-----((.(((((((((...............))))..)))))..))))).....((.........))))).)..))) ( -29.66) >DroSec_CAF1 14503 109 + 1 AA-AGCCGCUUCAUAAUUACCAUAUUUUCAAAUUACCAUUGG-----CCAGGGCCAUGGCCGCCAUUUUCCUU-----CGGGCCCGCGGCCAUAAAAGCUAAUUGUAUGCGUGCGUGGCU ..-((((((...(((((((.(...................((-----(....)))((((((((......((..-----..))...))))))))....).)))))))..(....))))))) ( -35.00) >DroSim_CAF1 14424 109 + 1 AA-AGCCGCUUCAUAAUUACCAUAUUUUCAAAUUACCAUUGG-----CCAGGGCCAUGGCCGCCAUUCUCCUU-----CGGGCCCGCGGCCAUAAAAGCUAAUUGUAUGCGUGCGUGGCU ..-((((((...(((((((.(...................((-----(....)))((((((((......((..-----..))...))))))))....).)))))))..(....))))))) ( -35.00) >DroEre_CAF1 7787 114 + 1 AA-AGCCGCUUCAUAAUUACCAUAUUUUCAAAUUACCAUUGGCCGGGCCAGGGCCAUGGUCGCCAUUUUCCUU-----UGGGCCCGCGGCCAUAAAAGCUAAUUGUAUGCGUGCGUGGCU ..-((((((........................(((.((((((..((((.(((((..((..........))..-----..)))))..))))......)))))).))).(....))))))) ( -35.70) >DroYak_CAF1 8152 106 + 1 AAAAGCCGCUUCAUAAUUACCAUAUUUUCAAAUUACCAUUGG-----CCAGGGCCAUGGCCGCCAUUUUCCUU-----CUUGCCCGCGGCCAUAAAAGCUAAUUGUAUGC----GUGGCU ...((((((...(((((((.(...................((-----(....)))((((((((..........-----.......))))))))....).)))))))....----)))))) ( -30.93) >consensus AA_AGCCGCUUCAUAAUUACCAUAUUUUCAAAUUACCAUUGG_____CCAGGGCCAUGGCCGCCAUUUUCCUU_____CGGGCCCGCGGCCAUAAAAGCUAAUUGUAUGCGUGCGUGGCU ...((((((...(((((((.(..............((.((((.....))))))..((((((((.....(((........)))...))))))))....).)))))))..(....))))))) (-24.06 = -24.94 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:25:00 2006