Locus 9023

Sequence ID 3R_DroMel_CAF1
Location 24,172,464 – 24,172,579
Length 115
Max. P 0.855099
window14456

overview

Window 6

Location 24,172,464 – 24,172,579
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.87
Mean single sequence MFE -35.72
Consensus MFE -20.25
Energy contribution -22.14
Covariance contribution 1.89
Combinations/Pair 1.08
Mean z-score -2.53
Structure conservation index 0.57
SVM decision value 0.80
SVM RNA-class probability 0.855099
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24172464 115 - 27905053
GUGGGCGGCUGGGGGGCGGCAUUCAUGAAUAAAAGAUUUUCCGAUUCACCCCGACACCAGAAGCAGGCAAACCGCCUCCUUCU-----CCAGCUGCUCCUCCUGCCGCCCAAUUUAUUAU
.((((((((.((((((((((.....(((((....(......).)))))..........(((((.((((.....)))).)))))-----...))))).))))).))))))))......... ( -50.70)
>DroSec_CAF1 13060 114 - 1
GUGGGUGGCUGG-GGGCGGCAUUCAUGAAUAAAAGAUUUUCCGAUUCACCCCGACACCAGAAGCAGGCAAACCGCCUCCUCUA-----ACUCCUCCUCCUCCUGCCGCCCAAUUUAUUAU
.((((((((.((-(((.((......(((((....(......).)))))..........(((.(.((((.....))))).))).-----......)).))))).))))))))......... ( -37.10)
>DroSim_CAF1 13013 114 - 1
GUGGU--GCUG--GGGCGGCAUUCAUGAAUAAAAGAUU-UCCGAUUCACC-CGACACCAGAAGCAGGCAAACCGCCUCCUCUACUCGUGCUCCUCCUCCUCCUGCCGCCCAAUUUAUUAU
(((((--(...--((((((((....(((((....(...-..).)))))..-.(((((.((.((.((((.....))))...)).)).))).))..........))))))))....)))))) ( -29.70)
>DroEre_CAF1 6325 99 - 1
GUGGGUGGCUGG-GGGCGGCAUUCAUGAAUAAAAGAUUUUCCGAUUCACCCCGACACCAGAA---------CCGAG-----------CAAACCGCCUCCUCCUGUCGCCCAAUUUAUUAU
.((((((((.((-(((.(((.....(((((....(......).)))))...((.........---------.))..-----------......))).))))).))))))))......... ( -30.90)
>DroYak_CAF1 6608 108 - 1
GUGGGUGGCUGG-GGGCGGCAUUCAUGAAUAAAAGAUUUUCCGAUUCACCCCGACACCAGAACCAACCAAACCGAG-----------CAAACCGCCUCCUCCUGUCGCCCAAUUUAUUAU
.((((((((.((-(((.(((.....(((((....(......).)))))...((...................))..-----------......))).))))).))))))))......... ( -30.21)
>consensus
GUGGGUGGCUGG_GGGCGGCAUUCAUGAAUAAAAGAUUUUCCGAUUCACCCCGACACCAGAAGCAGGCAAACCGCCUCCU________ACACCUCCUCCUCCUGCCGCCCAAUUUAUUAU
.((((((((.((.(((.((......(((((....(......).)))))................((((.....)))).................)).))))).))))))))......... (-20.25 = -22.14 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:59 2006