Locus 9022

Sequence ID 3R_DroMel_CAF1
Location 24,172,197 – 24,172,293
Length 96
Max. P 0.636290
window14455

overview

Window 5

Location 24,172,197 – 24,172,293
Length 96
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.68
Mean single sequence MFE -34.44
Consensus MFE -28.64
Energy contribution -28.80
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.47
Structure conservation index 0.83
SVM decision value 0.21
SVM RNA-class probability 0.636290
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24172197 96 + 27905053
GCUGAUGCUG---UUGUGGCGCCUAGGUGGUUGCUCGUUGCAAGUGCCACUGACAAACACAGCUGUCGAGUGCGGCGCUUAAAUGGCAAGUAAACUGCA
((...(((((---((..((((((..((((.((((.....)))).))))(((((((........)))).)))..))))))..)))))))((....)))). ( -34.90)
>DroSec_CAF1 12796 96 + 1
GCUGAUGCUG---UUGUGGCGCCUAGGUGGUUGCUCGUUGCAAGUGCCACUGACAAACACAGCUGUCGAGUGCGGCGCUUAAAUGGCAAGUAAACUGCA
((...(((((---((..((((((..((((.((((.....)))).))))(((((((........)))).)))..))))))..)))))))((....)))). ( -34.90)
>DroSim_CAF1 12746 96 + 1
GCUGAUGCUG---UUGUGGCGCCUAGGUGGUUGCUCGUUGCAAGUGCCACUGACAAACACAGCUGUCGAGUGCGGCGCUUAAAUGGCAAGUAAACUGCA
((...(((((---((..((((((..((((.((((.....)))).))))(((((((........)))).)))..))))))..)))))))((....)))). ( -34.90)
>DroEre_CAF1 6063 96 + 1
GCCGAUGUUG---UUGUUGCGCCUAGGUGGUUGCUGGUUGCAAGUGCCACUGACAAACACAGCUGUCGAGUGCGGCGCUUAAAUGGCAAGUAAACUGCA
((...(((..---((...(((((..((((.((((.....)))).))))(((((((........)))).)))..)))))...))..)))((....)))). ( -32.60)
>DroYak_CAF1 6337 99 + 1
GCUGGUGUUGUUGUUGUUGCGCCUAGGUGGUUGCCGGUUGCAAGUGCCACUGACAAACACAGCUGUCGAGUGCGGCGCUUAAAUGGCAAGUAAACUGCA
((.(((.((((..((...(((((..((((.((((.....)))).))))(((((((........)))).)))..)))))...))..))))....))))). ( -34.90)
>consensus
GCUGAUGCUG___UUGUGGCGCCUAGGUGGUUGCUCGUUGCAAGUGCCACUGACAAACACAGCUGUCGAGUGCGGCGCUUAAAUGGCAAGUAAACUGCA
((...(((((.......((((((..((((.((((.....)))).))))(((((((........)))).)))..))))))....)))))((....)))). (-28.64 = -28.80 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:59 2006