Locus 9020

Sequence ID 3R_DroMel_CAF1
Location 24,169,782 – 24,169,878
Length 96
Max. P 0.743982
window14450

overview

Window 0

Location 24,169,782 – 24,169,878
Length 96
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 72.16
Mean single sequence MFE -33.56
Consensus MFE -20.68
Energy contribution -19.62
Covariance contribution -1.06
Combinations/Pair 1.42
Mean z-score -1.59
Structure conservation index 0.62
SVM decision value 0.46
SVM RNA-class probability 0.743982
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24169782 96 - 27905053
-----------CAGUUGGGAGAAGCCUCCCGCUUCCUGUCGUGUGAAUCGUCUCGCUUUCUUUCAGGCGAGUCACGCCACUUUCUUUCCGUUGAAUUGGGACGCUUC
-----------.....(((((....)))))((.((((((.((((((.....(((((((......))))))))))))).)).(((........)))..)))).))... ( -32.20)
>DroSec_CAF1 10313 94 - 1
-----------CAGUUGGGAGAAGCCUCCCGCUUCCUGUCGCGUGAAUCGUCCCGCUUUCUUUCAGGCGAGUCCCGCCGCUUUCUCUCCGUUGAGUUGGGACGCU--
-----------.....(((((....)))))((......((((.((((..............)))).))))((((((..((((..........)))))))))))).-- ( -30.74)
>DroSim_CAF1 10381 94 - 1
-----------CAGUUGGGAGAAGCCUCCCGCUUCCUGUCGCGUGAAUCGUCUCGCUUUCUUUCAGGCGAGUCCCGCCGCUUUCUCUCCGUUGAAUUGGGACGCU--
-----------.....(((((....)))))((.((((...(((.(....(.(((((((......))))))).)...)))).(((........)))..)))).)).-- ( -29.70)
>DroAna_CAF1 3116 106 - 1
UGUCCGUUUUCUAGC-CUGGGAUUCUUCGCGCUUCUUAUUUGGCGACUCCUGCGGUCUUCUGCCGGAAGAAUCCAGACGCUUUCUGGUCGGCGAAUCCGGACGCUUC
.(((((..(((..((-(..(((((((((.((((........)))).......((((.....))))))))))))).(((........)))))))))..)))))..... ( -41.60)
>consensus
___________CAGUUGGGAGAAGCCUCCCGCUUCCUGUCGCGUGAAUCGUCCCGCUUUCUUUCAGGCGAGUCCCGCCGCUUUCUCUCCGUUGAAUUGGGACGCU__
................(((((....)))))((......((((.((((..............)))).))))((((((.....(((........))).))))))))... (-20.68 = -19.62 +  -1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:54 2006