Locus 9019

Sequence ID 3R_DroMel_CAF1
Location 24,165,327 – 24,165,418
Length 91
Max. P 0.880345
window14449

overview

Window 9

Location 24,165,327 – 24,165,418
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 91.94
Mean single sequence MFE -32.80
Consensus MFE -29.45
Energy contribution -29.23
Covariance contribution -0.21
Combinations/Pair 1.15
Mean z-score -2.26
Structure conservation index 0.90
SVM decision value 0.91
SVM RNA-class probability 0.880345
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24165327 91 + 27905053
AUGUUAACUUUCCGGUCAGCUGAGGCUGAUCUUACACUUCUGAGGCGGCUGCAAUGCGAUUGUCGUGUUUUUAUCGCGACACUGGCUGGAA
.........((((((((((.((.(((((.(((((......)))))))))).)).......(((((((.......))))))))))))))))) ( -32.90)
>DroEre_CAF1 19497 91 + 1
AUGUAAACUUUCCGGUCAGCUGAGGCUGAUCGUUCGCUUCUGAGGCGGCUGCAAUGCGAUUGUCGUGUUUUUAUCGCGACACUGGCUGGAA
.........(((((((((((....)))))))(((((((.....)))))..))...((.(.(((((((.......))))))).).)).)))) ( -31.70)
>DroYak_CAF1 22768 91 + 1
AUGUAAACUUUCCGGUCAGCUGAGGCUGAUCGUUCGCUUUUGAAGCGGUCGCAAUGCGAUUGUCGUGUUUUUAUCGCGACACAGGCCGGAG
..........(((((((.((....((.(((((((((....)).)))))))))...))...(((((((.......)))))))..))))))). ( -33.80)
>consensus
AUGUAAACUUUCCGGUCAGCUGAGGCUGAUCGUUCGCUUCUGAGGCGGCUGCAAUGCGAUUGUCGUGUUUUUAUCGCGACACUGGCUGGAA
.........((((((((((.((.(((((.(((........)))..))))).)).......(((((((.......))))))))))))))))) (-29.45 = -29.23 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:54 2006