| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,165,190 – 24,165,281 |
| Length | 91 |
| Max. P | 0.884749 |
| Location | 24,165,190 – 24,165,281 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 86.45 |
| Mean single sequence MFE | -30.80 |
| Consensus MFE | -27.83 |
| Energy contribution | -28.83 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24165190 91 - 27905053 AUCGCAUUUCAGAAUGUGUGGCAUAUUCGCGUACCUAAACUACUUGACGCCCAAGUCGCGACAGGAGGUCCUGGAUCUCCUGUUGCAGGGA ..(((......(((((((...))))))))))..(((.........(((......)))(((((((((((((...)))))))))))))))).. ( -33.40) >DroEre_CAF1 19360 91 - 1 AUCGCAUUUCAGAAUGUGUGGCAUAUUCGCGUACCUAAAUUACUUGACGCCCAAGUCGCGACAGGAGGUCCUGGAUCUCCUGCUGCAGGGA ..(((......(((((((...))))))))))..(((.........(((......)))(((.(((((((((...))))))))).)))))).. ( -28.80) >DroYak_CAF1 22631 91 - 1 AUCGCAAUUCAGAAUGUGUGGCAUAUUCGCGUACCUAAAUUACUUGACGCCCAAGUCGCGUCAGGAGGUCCUCGAUCUCCUGCUGCAGGGA ..(((......(((((((...))))))))))..(((.........(((......)))(((.(((((((((...))))))))).)))))).. ( -28.80) >DroAna_CAF1 17570 84 - 1 AGUGC-------GAUGUGUGGCAUAUUCGCUUACCUGAACUACCUGACGCCCAAGUCUAGGCAGGAGGUGCUGGACCUCCUGCUCCAGGGU ...((-------((((((...)))).))))...((((........(((......)))..((((((((((.....)))))))))).)))).. ( -32.20) >consensus AUCGCAUUUCAGAAUGUGUGGCAUAUUCGCGUACCUAAACUACUUGACGCCCAAGUCGCGACAGGAGGUCCUGGAUCUCCUGCUGCAGGGA ...........(((((((...))))))).....(((.........(((......)))(((((((((((((...)))))))))))))))).. (-27.83 = -28.83 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:53 2006