Locus 9017

Sequence ID 3R_DroMel_CAF1
Location 24,164,463 – 24,164,583
Length 120
Max. P 0.615228
window14447

overview

Window 7

Location 24,164,463 – 24,164,583
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.78
Mean single sequence MFE -49.35
Consensus MFE -36.95
Energy contribution -38.58
Covariance contribution 1.62
Combinations/Pair 1.09
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.17
SVM RNA-class probability 0.615228
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24164463 120 + 27905053
CUAUAACAGCCGAUGCGUCCGAGGCGAAGAAGUACUCCACUUCCUUGCGCUCCAGCGGUUGAAACUCGGCGUUGCAAUCGCCGGGCGGCAAUAGUUGAUAGGCCUGCUGCUGCGGCUGAC
......((((((........(((((((.(((((.....))))).)))).)))(((((((.....(((((((.......))))))).(((............))).))))))))))))).. ( -48.00)
>DroEre_CAF1 18633 120 + 1
CUAUAACGGCCGAGGCGUCUGAAGCGAAGAAAUACUCCACUUCCUUGCGCUCCAGCGGCUGAAACUCGGCACUGCAAUCGCCGGCCGGCAAUACUUGAUAGGCCUGCUGCUGCGGCUGAC
......((((((.(((((..((((.(.((.....)).).))))...))))).(((((((........(((.........)))((((..((.....))...)))).))))))))))))).. ( -44.30)
>DroYak_CAF1 21904 120 + 1
CUAUAACGGCUGAGGCGUCGGAGGCGAAGAAGUACUCGACUUCCUUGCGCUCCAGCGGCUGAAACUCGGCACUGCAAUCGCCGGGCGGCAAUACUUGAAAGGCCUGCUGCUGCGGCUGAC
......((((((.((((..((((((((.(((((.....))))).)))).)))).((.((((.....))))...))...)))).(((((((...((....))...))))))).)))))).. ( -50.10)
>DroAna_CAF1 16840 120 + 1
CUAUGACAGCCGAAGCAUCGGAGGCGAAGAAGUACUCCACUUCCUUUCGCUCCAGGGGCUGGAACUCGGCGUUGCAGUCCCCGGGGGGAAUUACGGGGUAGGCCUGCUGCUGCGGCUGGC
......((((((.((((..(.((((...(((((.....)))))..(((.((((.(((((((.(((.....))).))))))).)))).)))...........)))).))))).)))))).. ( -55.00)
>consensus
CUAUAACAGCCGAGGCGUCGGAGGCGAAGAAGUACUCCACUUCCUUGCGCUCCAGCGGCUGAAACUCGGCACUGCAAUCGCCGGGCGGCAAUACUUGAUAGGCCUGCUGCUGCGGCUGAC
......((((((........(((((((.(((((.....))))).)))).)))(((((((.....(((((((.......))))))).(((............))).))))))))))))).. (-36.95 = -38.58 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:52 2006