Locus 9013

Sequence ID 3R_DroMel_CAF1
Location 24,160,124 – 24,160,232
Length 108
Max. P 0.821614
window14439

overview

Window 9

Location 24,160,124 – 24,160,232
Length 108
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 69.57
Mean single sequence MFE -43.07
Consensus MFE -13.47
Energy contribution -11.62
Covariance contribution -1.85
Combinations/Pair 1.62
Mean z-score -2.13
Structure conservation index 0.31
SVM decision value 0.68
SVM RNA-class probability 0.821614
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24160124 108 - 27905053
CAAGGAGGAGACG-----CCAUCCACGGGAGGUGCCGCUCCUGUGGCCACUGUCGCCGCCUCGGGCAG---CGCCACCACUUCCUACGCCAAUGUGGUGCAGAACCUGGAGACCAA
...((.(....).-----)).((((.((..((((.((((((((.(((..(....)..))).)))).))---)).)))).....((.((((.....)))).))..))))))...... ( -42.00)
>DroVir_CAF1 15464 114 - 1
CAAGGAUGAUG--CCUCUGCAUCGAAUGCCGGCGCCGCUGCCGUUGCCGUUGCAGCUGCCACAGCCAAUGCUGCAACUGCAUCAUAUGCGAAUGUUGUCCAGAAUCUGGAUAGCAA
......(((((--(....))))))..((((((((....))))).(((.((((((((.((....))....)))))))).)))......)))..((((((((((...)))))))))). ( -44.00)
>DroEre_CAF1 13716 108 - 1
CAAGGAGGAGACG-----CCAUCCACGGGAGGUGCCGCUCCUGUGGCCACCGUCGCUGCUUCGGGCAG---CGCCACCACUUCCUACGCCAAUGUGGUGCAGAACUUGGACACCAA
..((((((.((((-----....(((((((((......)))))))))....))))(((((.....))))---).......)))))).........((((((........).))))). ( -44.30)
>DroYak_CAF1 17402 108 - 1
CAAGGAGGAGACG-----CCAUCCACGGGAGGUGCCGCUCCUGUGGCCACCGUCGCUGCCUCGGGCAG---CGCCACCACUUCCUACGCCAAUGUGGUGCAAAACCUGGACACCAA
..((((((.((((-----....(((((((((......)))))))))....))))((((((...)))))---).......)))))).........((((((........).))))). ( -45.70)
>DroMoj_CAF1 13415 114 - 1
CAAGGAUGAUG--CCACAGCAUCGAAUGCCGGCGCCGUUACCGUUGCCGCUGUUGCUGCAGCAUCUGCAGCGGCCACUGCAUCAUAUGCAAAUGUUGUCCAGAAUCUGGAUAACAA
.....((((((--(....((((...))))(((((.((....)).)))))..((((((((((...))))))))))....))))))).......((((((((((...)))))))))). ( -45.00)
>DroAna_CAF1 12764 99 - 1
CAAGGAGGAGACA--ACUCCCACCACGGGAGCCGCUGCUCCUGCGAGCUCCGGUGC---------------AGCCACCACUUCGUACGCCAAUGUUGUCCAGAAUCUGGACACCAA
...((.((((...--.))))..))(((((((((((.......))).)))))((((.---------------...))))....))).......((.(((((((...))))))).)). ( -37.40)
>consensus
CAAGGAGGAGACG_____CCAUCCACGGGAGGCGCCGCUCCUGUGGCCACCGUCGCUGCCUCGGGCAG___CGCCACCACUUCCUACGCCAAUGUGGUCCAGAACCUGGACACCAA
..((((((((........((.......)).((((((((....)))).)))).............................)))))..(((.....)))......)))......... (-13.47 = -11.62 +  -1.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:45 2006