Locus 9012

Sequence ID 3R_DroMel_CAF1
Location 24,157,693 – 24,157,808
Length 115
Max. P 0.817371
window14438

overview

Window 8

Location 24,157,693 – 24,157,808
Length 115
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -31.38
Consensus MFE -26.05
Energy contribution -26.42
Covariance contribution 0.38
Combinations/Pair 1.07
Mean z-score -1.86
Structure conservation index 0.83
SVM decision value 0.67
SVM RNA-class probability 0.817371
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24157693 115 + 27905053
UGCAUAUCCAUUUCAAGUGGCUCAAAACGCUUUCGAAAGCAGAGCGAAUUUCGAACUGACGCUUGACGACAACUU----AGUUGAGUUAUCAACUUUUAUGGACGUGUAAACUUUUGGC
((((..(((((.(((((((........(((((((....).))))))....((.....))))))))).........----((((((....))))))...)))))..)))).......... ( -31.40)
>DroSec_CAF1 14656 115 + 1
UGCAUAUCCAUUUCAAGUGGCUCAAAACGCUUUCGAAUGCAGAGCGAAUUUCGAACUGACGCUUGACGACAACUU----AGUUCAGUUAUCAACUUUUAUGGACGUGUAAACUUUUGGC
((((..(((((.(((((((((.......)).........(((..((.....))..))).))))))).((.((((.----.....)))).)).......)))))..)))).......... ( -25.70)
>DroEre_CAF1 11361 112 + 1
UGCAUAUUCAUUUCAAGUGGCUCAAAACGCUUUCGAAAGCAGAGCGAAUUUCAAACUGCCGCUUGACGACAAGUU----AGUUGAGUUAUCAGCU-U--UGGACGUGUAAACUUUUGGC
((((..((((..(((((((((......(((((((....).))))))...........))))))))).........----((((((....))))))-.--))))..)))).......... ( -32.83)
>DroYak_CAF1 15031 117 + 1
UGCAUAUCCAUGCCAAGUGGCUUAAAACGCUUUCGAAAGCAGAGCGAAUCUCAAACUGACGCUUGACGACAAGUUAGUUAGUUGAGUUAUCAACUUU--UGGACGUGUAAACUUUUGGC
((((..((((.(((....)))......(((((((....).))))))...(((((.((((((((((....)))))..))))))))))...........--))))..)))).......... ( -35.60)
>consensus
UGCAUAUCCAUUUCAAGUGGCUCAAAACGCUUUCGAAAGCAGAGCGAAUUUCAAACUGACGCUUGACGACAACUU____AGUUGAGUUAUCAACUUU__UGGACGUGUAAACUUUUGGC
((((..((((..(((((((........(((((((....).))))))....((.....))))))))).............((((((....))))))....))))..)))).......... (-26.05 = -26.42 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:44 2006