| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,153,421 – 24,153,524 |
| Length | 103 |
| Max. P | 0.527685 |
| Location | 24,153,421 – 24,153,524 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.76 |
| Mean single sequence MFE | -24.07 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.97 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24153421 103 + 27905053 AUGACUCAACCCAAUUGCAGGAUCA---UGAGUCACAAGGACUUGUCAUUUUGCGCAGAGAAACGACUUUCCUAUGAGUCAUAAGGUUUACUAUUGGUAACUAUUU ((((((((........(((((((.(---..((((.....))))..).)))))))..((.((((....)))))).))))))))..((((.((.....)))))).... ( -27.10) >DroSec_CAF1 10518 90 + 1 AUGACUCCGCCCAAUUGCAGGGUCA---UGAGUCACAAGGACUUGUCAUUUUGCGCAGAGAAAGGACUUUCCUAUGAGUCAC-------------GAUAACUAUUU .((((((.........(((((((.(---..((((.....))))..).)))))))........(((.....)))..)))))).-------------........... ( -23.60) >DroEre_CAF1 6794 98 + 1 AUGACUCCACCCAAUUGCAGGGACA---UGAGUCACAAGGACUUGUCAUUUUGCGCACAAUAAGGACAUUCCUAUGAGUCAUGAGGU-AACUAU----AAAAAUUU ......((.(((.......))).((---(((.(((..((((..((((...(((....)))....)))).)))).))).))))).)).-......----........ ( -24.30) >DroYak_CAF1 10771 90 + 1 AUGACUCCACCCAAUUGCAGGGACAUCAUGAGUCACAAGGACUUGCCAUUCUGCGC-----------AUUCCCAUGAGUCACGAGGU-AACUCU----UGUAGUUU ............((((((((((((.((.(((.(((...(((..((((.....).))-----------).)))..))).))).)).))-...)))----))))))). ( -21.30) >consensus AUGACUCCACCCAAUUGCAGGGACA___UGAGUCACAAGGACUUGUCAUUUUGCGCAGAGAAAGGACAUUCCUAUGAGUCACGAGGU_AACUAU____AACAAUUU .((((((.........(((((((.....((((((.....))))))..)))))))........(((.....)))..))))))......................... (-14.85 = -15.97 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:42 2006