Locus 9009

Sequence ID 3R_DroMel_CAF1
Location 24,151,085 – 24,151,177
Length 92
Max. P 0.709032
window14434

overview

Window 4

Location 24,151,085 – 24,151,177
Length 92
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.10
Mean single sequence MFE -19.97
Consensus MFE -16.93
Energy contribution -17.27
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.15
Structure conservation index 0.85
SVM decision value 0.37
SVM RNA-class probability 0.709032
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24151085 92 - 27905053
UACUUAACUCAAUUGAUCUGAAGUGAACUGGGGAAAGUAAACUAUAAAUAU----------------------------AACUAAGUGGUUGUAUGUUUACAUGCAAAAAUUUAUGAAUA
(((((..((((.((.((.....)).)).))))..)))))............----------------------------...(((((..(((((((....)))))))..)))))...... ( -17.90)
>DroSec_CAF1 8262 114 - 1
UACUUAACUCAAUUAAUCUGAAGUGAACUGGGGAAAAGAGACUAUAAAU----AUGACAGCUAA--UUGUGAGCCAAAAAACUAAGUGGUUGUAUGUUUACAUGCAAUAAUUUAUGAGUA
......(((((.....(((..((....))..)))...............----......(((..--.....)))........(((((.((((((((....)))))))).)))))))))). ( -20.10)
>DroSim_CAF1 2660 118 - 1
UACUUAACUCAAUUGAUCUGAAGUGAACUGGGGAAAAGAGACUAUAAAUAUAUAUGACAGCUAGUUGUG--AGCCAAAAAACUAAGUGGUUGUAUGUUUACAUGCAAUAAUUUAUGAGUA
......(((((.(((.(((..((....))..)))..................((..((.....))..))--...))).....(((((.((((((((....)))))))).)))))))))). ( -21.90)
>consensus
UACUUAACUCAAUUGAUCUGAAGUGAACUGGGGAAAAGAGACUAUAAAUAU__AUGACAGCUA____UG__AGCCAAAAAACUAAGUGGUUGUAUGUUUACAUGCAAUAAUUUAUGAGUA
......(((((.....(((..((....))..)))................................................(((((..(((((((....)))))))..)))))))))). (-16.93 = -17.27 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:41 2006