| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,149,414 – 24,149,525 |
| Length | 111 |
| Max. P | 0.841877 |
| Location | 24,149,414 – 24,149,525 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -43.64 |
| Consensus MFE | -28.96 |
| Energy contribution | -28.97 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24149414 111 - 27905053 UCGGGCGAGUAUGCCAACUAUCUGCCGGCGGACGCCGCCGGCGCCGA---CUC---GCAGUCCUCGUAUGUGCUCAUGGGCACCCACUACUUUGGCAACGUGCCCGC---CGCCUACAUC .((((((.((.((((((......((((((((...))))))))...((---(..---...)))...((..(((((....)))))..))....)))))))).)))))).---.......... ( -46.30) >DroVir_CAF1 3373 111 - 1 UCCGGCGAGUACGUCAACUAUUUGCCGGCGGACGCAGCCGGCGCAGA---UUCCUCGCAAUCC---UAUGUCCUCAUGGGCACACACUAUUUCGGCAAUGUGCCGGC---UGCCUACAUU .((((((((((.(....))))))))))).....((((((((((((..---..((.........---..(((((....)))))...........))...)))))))))---)))....... ( -46.75) >DroGri_CAF1 3788 111 - 1 UCCGGCGAGUAUGUCAACUAUUUGCCGGCAGACGCAGCCGGCGCAGA---UACUUCGCAAUCA---UAUGUGCUCAUGGGCACCCACUAUUUCGGCAACGUUCCGGC---UGCGUACAUU .((((((((((.(....)))))))))))...((((((((((.((...---.............---...(((((....)))))..........(....))).)))))---)))))..... ( -45.50) >DroWil_CAF1 2715 114 - 1 UCGGCCGACUAUGCUAACUUUUUGCCAGCGGAUGCAGCUGGCGCCGA---UUCAUCGCAAUCCUCUUAUGUCCUUAUGGGCACUCACUACUUUGGCAAUGUGCCGGC---UGCCUACAUU .((((((................((((((.......))))))(((((---((......))))......(((((....)))))...........))).......))))---))........ ( -34.30) >DroMoj_CAF1 3396 111 - 1 UCUGGCGAGUACGCCAACUACUUGCCGGCGGACGCAGCCGGCGCAGA---UUCCUCGCAAUCC---UACGUCCUCAUGGGCACCCACUAUUUCGGCAACGUGCCGGC---UGCCUACAUU .((((((((((.......)))))))))).....(((((((((((...---.............---...((((....))))............(....)))))))))---)))....... ( -46.10) >DroAna_CAF1 2744 117 - 1 UCGGGCGAGUAUGCCAACUAUCUGCCGGCGGAUGCCGCCGGUGCCGACGCCUC---GCAGUCGUCCUUUGUCCUCAUGGGCACCCACUACUUCGGCAAUGUGCCCGCCGCCGCCUACAUC .((((((....((((........((((((((...))))))))..((((.....---...)))).....(((((....)))))...........))))...)))))).............. ( -42.90) >consensus UCGGGCGAGUAUGCCAACUAUUUGCCGGCGGACGCAGCCGGCGCAGA___UUC_UCGCAAUCC___UAUGUCCUCAUGGGCACCCACUACUUCGGCAACGUGCCGGC___UGCCUACAUU .((((((.((.((((........((((((.......))))))...........................((((....))))............)))))).)))))).............. (-28.96 = -28.97 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:40 2006