Locus 9007

Sequence ID 3R_DroMel_CAF1
Location 24,140,097 – 24,140,198
Length 101
Max. P 0.541211
window14432

overview

Window 2

Location 24,140,097 – 24,140,198
Length 101
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.12
Mean single sequence MFE -23.70
Consensus MFE -20.67
Energy contribution -19.57
Covariance contribution -1.11
Combinations/Pair 1.29
Mean z-score -1.06
Structure conservation index 0.87
SVM decision value 0.02
SVM RNA-class probability 0.541211
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24140097 101 + 27905053
CACAUCUAAAAUUCAUUGUUCAUAAGACAUGGACGCAUUUUGCAUGGCCCAGCGCAUUCCAGUGUCGCCUGCAGGUGUC----UUUCCGGCCACGCC-CUCACCGC---
.................((((((.....))))))((....((((.(((...((((......)))).)))))))((((..----.....(((...)))-..))))))--- ( -24.20)
>DroPse_CAF1 351016 100 + 1
UACAUCUAAAAUUCAUUGUUCAUAAGACAUGAACGCAUUUUGCAUGGUCCAAUGCAUUUCCGUGUCGCCUGCAGGUGUCACUUUUUCCCGCUCUCCCGCU---------
.................((((((.....))))))((....(((((......))))).....(((.((((....)))).)))........)).........--------- ( -22.20)
>DroEre_CAF1 342600 102 + 1
CACAUCUAAAAUUCAUUGUUCAUAAGACAUGGACGCAUUUUGCAUGGCCCAGCGCAUUCCCGUGUCGCCUGCAGGUGUA----UUUCC-GCCACGCCCC--UCCGCCGC
.................((((((.....))))))((....((((.(((...((((......)))).)))))))((((..----....)-)))..))...--........ ( -23.40)
>DroWil_CAF1 395779 91 + 1
-GCAUCUAAAAUUCAUUGUUCAUAAGACAUGAACGCAUUUUGCAUGGUCCAAUGAAUUCCCGUUUCGCCUGCAGGUGCC-------CC-GCCACCU--------GCCA-
-........((((((((((((((.....))))))((.....)).......))))))))............(((((((..-------..-..)))))--------))..- ( -23.20)
>DroYak_CAF1 342042 102 + 1
AACAUCUAAAAUUCAUUGUUCAUAAGACAUGAACGCAUUUUGCAUGGCCCAGCGCAUUCCCGUGUCGCCUGCAGGUGUG----UUUCC-GCCACGCCCC--UCCGCCGC
.................((((((.....))))))((....((((.(((...((((......)))).)))))))((((((----.....-..))))))..--...))... ( -26.80)
>DroAna_CAF1 332824 90 + 1
CGCAUCUAAAAUUCAUUGUUCAUAAGACAUGAACGCAUUCUGCAUGGCCCAACGCAUUCCCGUGUCGCCUGCAGGUGUC----U--------ACGUCCC-------GGA
....(((..........((((((.....))))))((((.(((((.(((...((((......)))).)))))))))))).----.--------.......-------))) ( -22.40)
>consensus
CACAUCUAAAAUUCAUUGUUCAUAAGACAUGAACGCAUUUUGCAUGGCCCAACGCAUUCCCGUGUCGCCUGCAGGUGUC____UUUCC_GCCACGCCCC_____GCCG_
.((((((..........((((((.....)))))).......(((.(((...(((......)))...))))))))))))............................... (-20.67 = -19.57 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:39 2006