| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,139,088 – 24,139,180 |
| Length | 92 |
| Max. P | 0.602485 |
| Location | 24,139,088 – 24,139,180 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.61 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -19.32 |
| Energy contribution | -19.40 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24139088 92 - 27905053 CGUUGCAUUUGUAAUGAGAGUGGUGCUUGAGCAAAAUGGAAAAUUUAUUGCGCUGACAGUUAUGGG--CCCAUAACAAUAAUAAAAA-------------------------CAGCAGC .(((((....((((((((.((..(((....)))..))......)))))))).......((((((..--..))))))...........-------------------------..))))) ( -20.60) >DroVir_CAF1 347807 92 - 1 CGUUGCAUCUGUAAUGAAAGUGGUGCUCGAGCAAAAUGGAAAAUUUAUUGCGCUGACAGUUAUGGG--UCCAUAACAAUAAUAAAAA-------------------------CAGCAGC .(((((....((((((((.((..(((....)))..))......)))))))).......((((((..--..))))))...........-------------------------..))))) ( -20.90) >DroGri_CAF1 301852 92 - 1 CGUUGCAUUUAUUAUGAAAGUGGUGCUCGAGCCAAAUGGAAAAUUUAUUGCGCUGACAGUUAUGGG--UCCAUAACAAUAAUAAAAA-------------------------CAGCAGC .((((..((((((((....(((((((..((.((....))....))....))))).)).((((((..--..)))))).))))))))..-------------------------))))... ( -22.20) >DroWil_CAF1 394042 119 - 1 CGUUGCAUUUGUAAUGAAAGUGGUGCUUGAAGAAAAUGGAAAAUUUAUUGCGCUGACAGUUAUAGGGUCCCAUAACAAUAAUAAAGAAGAGACAGGAGAGGGAGAAAAAAAACAGCAAC .(((((.((((((((.....((((((.((((............))))..))))))...)))))))).((((............................))))...........))))) ( -19.49) >DroMoj_CAF1 374283 92 - 1 CGUUGCAUUUGUAAUGAAAGUGGUGCUCGAGCAAAAUGGAAAAUUUAUUGCGCUGACAGUUAUGGG--UCCAUAACAAUAAUAAAAA-------------------------CAGCAGC .(((((....((((((((.((..(((....)))..))......)))))))).......((((((..--..))))))...........-------------------------..))))) ( -20.90) >DroAna_CAF1 331825 92 - 1 CGUUGCAUUUGUAAUGAGAGUGGUGCUUGAGGAAAAUGGAAAAUUUAUUGCACUGACAGUUAUGGG--CCCAUAACAAUAAUAAAAA-------------------------CAGCAUC .((((..(((((.......(((((((.((((............))))..))))).)).((((((..--..))))))....)))))..-------------------------))))... ( -18.40) >consensus CGUUGCAUUUGUAAUGAAAGUGGUGCUCGAGCAAAAUGGAAAAUUUAUUGCGCUGACAGUUAUGGG__CCCAUAACAAUAAUAAAAA_________________________CAGCAGC .(((((.............(((((((.......................))))).)).(((((((....)))))))......................................))))) (-19.32 = -19.40 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:38 2006