Locus 9005

Sequence ID 3R_DroMel_CAF1
Location 24,133,160 – 24,133,261
Length 101
Max. P 0.912447
window14430

overview

Window 0

Location 24,133,160 – 24,133,261
Length 101
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 90.48
Mean single sequence MFE -18.41
Consensus MFE -13.65
Energy contribution -14.28
Covariance contribution 0.63
Combinations/Pair 1.11
Mean z-score -3.43
Structure conservation index 0.74
SVM decision value 1.08
SVM RNA-class probability 0.912447
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24133160 101 - 27905053
AAUUUCGCGGCACUUAUCCGCACCAUCCAAACCAACCAAAGCAUUCGAAAUCAUUCGAAA-GCAACCCGUUCAAAACUCAACCCACAAGUGCGGACUUCGCA
......((((......(((((((.................((.((((((....)))))).-)).....(((........)))......)))))))..)))). ( -22.40)
>DroSec_CAF1 319718 101 - 1
AAUUUCUCGGCACUUAUCCGCACCGUCCAAACCAACCAAACCAUUCGAAAUCAUUCGAAA-GCAACCCAUUCAAAACUCAACCCACAAGUGCGGACUCCGCA
.........((.....(((((((.((....))...........((((((....)))))).-...........................)))))))....)). ( -15.90)
>DroSim_CAF1 320069 101 - 1
AAUUUCGCGGCACUUAAUCGCACCGUCCAAACCAACCAAACCAUUCGAAAUCAUUCGAAA-GCAACCCAUUCAAAACUCAACCCACAAGUGCGGACUCCGCA
......(((((........))...((((...............((((((....)))))).-(((.........................)))))))..))). ( -17.11)
>DroYak_CAF1 334861 94 - 1
AAUUUCGCGGCACUUAUCCGCACCA----AAC----CAAACCAUUCAAAAUCAUUCGAAACUCAACCCAUUCAAAACUCAACCCACAAGUGCGGACGCCGCA
......(((((.....(((((((..----...----....................................................))))))).))))). ( -18.22)
>consensus
AAUUUCGCGGCACUUAUCCGCACCAUCCAAACCAACCAAACCAUUCGAAAUCAUUCGAAA_GCAACCCAUUCAAAACUCAACCCACAAGUGCGGACUCCGCA
......((((......(((((((....................((((((....))))))..(.....)....................)))))))..)))). (-13.65 = -14.28 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:37 2006