| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,131,665 – 24,131,761 |
| Length | 96 |
| Max. P | 0.821413 |
| Location | 24,131,665 – 24,131,761 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -18.32 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24131665 96 - 27905053 CCGGCCUGAAAGGGCGACAUUGAGGUCGCUACAUGCCUCU----------------UUGGGUCGUGUAAUAAAAGGCAUAAAACUUUGCCUCUAACGAGCAUCGUUUUUACG ...((((.....((((((......))))))((((((((..----------------..))).)))))......))))..(((((..(((.((....)))))..))))).... ( -30.10) >DroPse_CAF1 340452 100 - 1 -----UCGAA--AGCGGCUCAGAGGUGG-----UGCCUCCACCCGAAACGGGGUCGGGGGGUCAUGUAAUAAAACGCAUAAAACUUUGCCUCUAACGAGCAUCGUUUUUACG -----..(((--(((((((((((((..(-----..(((((((((......)))).)))))...((((........))))......)..)))))...))))..)))))))... ( -35.90) >DroSec_CAF1 318201 96 - 1 CGCUCCUGAAAGGGCGACAUUGAGGUCGCUACAUGCCUCC----------------UUGGGUCGUGUAAUAAAAGGCAUAAAACUUUGCCUCUAACGAGCAUCGUUUUUACG .((((((....))(((((.(..(((..((.....))..))----------------)..))))))........(((((........))))).....))))............ ( -29.80) >DroSim_CAF1 318508 96 - 1 CGCUCCUGAAAGGGCGACAUUGAGGUCGCUACAUGCCUCC----------------UUGGGUCGUGUAAUAAAAGGCAUAAAACUUUGCCUCUAACGAGCAUCGUUUUUACG .((((((....))(((((.(..(((..((.....))..))----------------)..))))))........(((((........))))).....))))............ ( -29.80) >DroEre_CAF1 333959 83 - 1 CCGCCCUGAAAUGGCGACAUUGAGGUCGCCUCAUGCCUCC----------------U-------------AAAAGGCAUAAAACUUUGCCUCUAACGAGCAUCGUUUUUACG ............((((((......))))))..((((((..----------------.-------------...))))))(((((..(((.((....)))))..))))).... ( -25.90) >DroYak_CAF1 333182 96 - 1 CCGUCCUGAAAAGGCGACAUUGAGGUCGCUACAUGCCUCC----------------UUGGGUCGUGUAAUAAAAGGCAUAAAACUUUGCCUCUAACGAGCAUCGUUUUUACG ..(((((....))(((((.(..(((..((.....))..))----------------)..)))))).........)))..(((((..(((.((....)))))..))))).... ( -27.70) >consensus CCGUCCUGAAAGGGCGACAUUGAGGUCGCUACAUGCCUCC________________UUGGGUCGUGUAAUAAAAGGCAUAAAACUUUGCCUCUAACGAGCAUCGUUUUUACG ............((((((......))))))..((((((...................................))))))(((((..(((.((....)))))..))))).... (-18.32 = -18.90 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:36 2006