| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,129,257 – 24,129,356 |
| Length | 99 |
| Max. P | 0.771411 |
| Location | 24,129,257 – 24,129,356 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 64.58 |
| Mean single sequence MFE | -21.38 |
| Consensus MFE | -4.98 |
| Energy contribution | -4.27 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.23 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24129257 99 - 27905053 ----------UUCGAAUCUUAUC-----GCCACUUAUUUAA-UUUUACUCAAAAAUGAAUGGUAUCCUUACCAAUUAGGGAAUCAUUCAAUCCUUACCUUUA-GGUGUUGUGUCAG- ----------.............-----(.(((........-.............((((((((.((((((.....)))))))))))))).....((((....-))))..))).)..- ( -18.90) >DroPse_CAF1 335848 108 - 1 UUUCCUUCCCUUCGACCCUCGAC-----UCCAUUCAUUU-GCACU-GUUGUA-AAUUCAGUGUAACUUUGACUAUUAGGCAACUUUGCUCUCUGCACCUUUGUUGC-UACUGCGAGU .................((((..-----.....(((.((-(((((-(.....-....))))))))...)))......((((((..(((.....))).....)))))-)....)))). ( -23.20) >DroSec_CAF1 315790 100 - 1 ----------UUCGAAUCUUAUC-----GCCACUUAUUUCA-UUUUAUUCAAAAAUGAAUGGUAUCCUUACCAAUUAGGGAACCAUUCACCCCUCACCUUUAUGGUGUUGUGUCAG- ----------.............-----(.(((........-.............((((((((.((((((.....)))))))))))))).....((((.....))))..))).)..- ( -23.00) >DroSim_CAF1 316088 100 - 1 ----------UUCGAAUCUUAUC-----GCCACUUAUUUCA-UUUUAUUCAAAAAUGAAUGGUAUCCUUUCCAAUUAGGGAACCAUUCACCCCUCACCUUUAUGGUGUUGUGUCAG- ----------.............-----(.(((........-.............((((((((.(((((.......))))))))))))).....((((.....))))..))).)..- ( -22.00) >DroYak_CAF1 330356 102 - 1 ----------AUUGGCUCUUACCAUAUGUACCAUUAUUUCAAUCUGAUCUCAAAAUGAAU----UCCUUACCAAUUAGGAAACCAUUCACCCCGAACCUUCAUGGUGUUGUGCCAG- ----------..((((.(.((((((............((((.(.((....)).).))))(----((((........)))))....................))))))..).)))).- ( -18.60) >DroPer_CAF1 337631 108 - 1 UUUCCUUCCCUACGACCCUCGAC-----UCCAUUAAUUU-GCACU-GUUGUA-AAUUCAGUGUAACUUUGACUAUUAGGCAACUUUGCUCUCUGCACCUUUGUUGC-UACUGCGAGU .................((((..-----....((((.((-(((((-(.....-....))))))))..))))......((((((..(((.....))).....)))))-)....)))). ( -22.60) >consensus __________UUCGAAUCUUAUC_____GCCACUUAUUUCA_UCUUAUUCAAAAAUGAAUGGUAUCCUUACCAAUUAGGGAACCAUUCACCCCGCACCUUUAUGGUGUUGUGCCAG_ .......................................................(((((.((.((((........)))).)).))))).............((((.....)))).. ( -4.98 = -4.27 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:35 2006