Locus 9002

Sequence ID 3R_DroMel_CAF1
Location 24,128,567 – 24,128,669
Length 102
Max. P 0.918124
window14427

overview

Window 7

Location 24,128,567 – 24,128,669
Length 102
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 92.73
Mean single sequence MFE -41.90
Consensus MFE -37.88
Energy contribution -38.40
Covariance contribution 0.52
Combinations/Pair 1.07
Mean z-score -1.45
Structure conservation index 0.90
SVM decision value 1.12
SVM RNA-class probability 0.918124
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24128567 102 - 27905053
CAGCCGUCGGCCAUGGCGAAUAUAGCCAUAU--AUAGAGGCGUUGAGUGCCGCGGGGGCGUGGCACGCAUUGUCUGCAGGUAAGCCUUUUUGCGGUGGUGC-CCA
..(((.((....(((((.......)))))..--...))))).....((((((((....))))))))((((..((.(((((........)))))))..))))-... ( -40.70)
>DroSec_CAF1 315100 102 - 1
CAGCCGUUGGCCAUGGCGAAUUUAGCCAUAU--AUAGAGGCGAUGAGUGCCGCGGGGGCGUGGCACGCAUUGUCUGCAGGUAAGCCUUUUUGCGGUGGGGC-CCA
..(((.(..((((((((.......)))))..--....((((((((.((((((((....)))))))).))))))))(((((........))))))))).)))-... ( -44.00)
>DroSim_CAF1 315392 104 - 1
CAGCCGUUGGCCAUGGCGAAUAUAGCCAUAUAUAUAGAGGCGAUGAGUGCCGCGGGGGCGUGGCACGCAUUGUCUGCAGGUAAGCCUUUUUGCGGUGGGGC-CCA
..(((.(..((((((((.......)))))........((((((((.((((((((....)))))))).))))))))(((((........))))))))).)))-... ( -44.00)
>DroEre_CAF1 330842 102 - 1
CAGCCGUUGGCCAUGGUGAAUGGAGCCAUAC--AGACAGGCGAUGAGUACCGCGGGGGCGUGGCACGCAUUGUCUGCAGGUAAGCCUUUUUGCGGUGGGGC-CCA
..(((.....((((.(..((.((.((..(((--...(((((((((.((.(((((....))))).)).)))))))))...))).)))).))..).)))))))-... ( -40.00)
>DroYak_CAF1 329670 103 - 1
CAGCCGUUGGCCAUGUAGAAUGGAGCCAUAU--AUACAGGCGAUGAGUGCCGUGGGGGCGUGGCACGCAUUGUCUGCAGGUAAGCCUUUUUGCGGUGUGGCCCCA
..(((...))).........(((.(((((((--...(((((((((.((((((((....)))))))).))))))))).(((....))).......))))))).))) ( -40.80)
>consensus
CAGCCGUUGGCCAUGGCGAAUAUAGCCAUAU__AUAGAGGCGAUGAGUGCCGCGGGGGCGUGGCACGCAUUGUCUGCAGGUAAGCCUUUUUGCGGUGGGGC_CCA
..(((((.(((.(((((.......)))))........((((((((.((((((((....)))))))).))))))))........))).....)))))......... (-37.88 = -38.40 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:34 2006