| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,119,410 – 24,119,512 |
| Length | 102 |
| Max. P | 0.852562 |
| Location | 24,119,410 – 24,119,512 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.85 |
| Mean single sequence MFE | -28.36 |
| Consensus MFE | -18.11 |
| Energy contribution | -18.62 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24119410 102 - 27905053 UGUGGACUUCCA-UAACGCGGAGUUGUCACAAAAUGUUUUUGGCAGACGUCAAGUAGAUCUUUCCAGCUGUUUUACAGAUCAGCAUGGUCCGCAAGGACCGAA (((((....)))-))....((((..(((((.....)).((((((....))))))..)))..)))).((((.((....)).)))).((((((....)))))).. ( -32.30) >DroSec_CAF1 306446 101 - 1 UGUGGACUUCCA-UAACGCGGAAUUGUCACGAAAUAUUUUU-GCAGACGUCAAGUAAAUCUUUCCAGUUGUUUUACAGAUCAGCACGGUCCGCAAGGACCGAA (((((....)))-))..((((((.(((......))).))))-))......................((((.((....)).)))).((((((....)))))).. ( -27.30) >DroSim_CAF1 306597 101 - 1 UGUGGACUUCCA-UAACGCGGAAUUGUCACAAAAUAUUUUU-GCAGACGUCAAGUAAAUCUUUCCAGUUGUUUUACAGAUCAGCACGGUCCGCAAGGACCGAA (((((....)))-))..((.((.((((.((((......(((-((.........))))).........))))...)))).)).)).((((((....)))))).. ( -27.46) >DroEre_CAF1 321937 102 - 1 UGUGGACUUCCA-UAACAUGGAGUUGUCACAAAAUGUUUUUGGCGGACGUCAAGUAGAUUUUUCCAGCUGCUUUCCAGAUCAGCAAGGGCCACAAGGGCCGAA (((((....)))-))...(((((..(((((.....)).((((((....))))))..)))..)))))((((.((....)).))))...((((.....))))... ( -28.70) >DroYak_CAF1 320598 102 - 1 UGUGGACUUCCA-UAACAUGGAAUUGUCACAAAAUGUUUUUGGCAGACGUCAAGUACAUUUUUCCAGCUUAUUUCCAGAUCAGCAAGGUCCACAAGGGCCGAA .((((..(((((-(...))))))...))))(((((((.((((((....)))))).)))))))....(((.(((....))).)))..(((((....)))))... ( -29.80) >DroAna_CAF1 313799 90 - 1 UUUGAACUUCCAAUCACGCUCAUGGAUGACAGUUUCAUGUU-CCA-----CA-------AUUUCCAGCUACUGCGUGGCUUAGCAGGGUCCGCAAGGACCAAA .............((((((...((((.((((......))))-...-----..-------...))))......))))))........(((((....)))))... ( -24.60) >consensus UGUGGACUUCCA_UAACGCGGAAUUGUCACAAAAUGUUUUU_GCAGACGUCAAGUAAAUCUUUCCAGCUGUUUUACAGAUCAGCAAGGUCCGCAAGGACCGAA (((((..((((........))))...)))))...................................((((.((....)).))))..(((((....)))))... (-18.11 = -18.62 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:32 2006