Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 561,330 – 561,443 |
Length | 113 |
Max. P | 0.606274 |
Location | 561,330 – 561,443 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 71.96 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -16.50 |
Energy contribution | -15.70 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.29 |
Mean z-score | -1.26 |
Structure conservation index | 0.61 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 561330 113 + 27905053 AGUAUGUUCAGUAUAUCUGAAGA-UAUAUCUUACACAUGCAGAUCGGAAAAUGUCGUCUCCAACGAUGUUAAGUGAUGGUAAUUUGCGUCCCGGUCUGCCUGGACUUCCUGCAA .(((.((((((((((((....))-))))..........(((((((((..((((((((.....))))))))....((((........)))))))))))))))))))....))).. ( -34.70) >DroVir_CAF1 7246 89 + 1 ----UC-----------U----------UCUUACACAUGGAGAUCGGAGAAUGUCGUUUCCAGCGACGUUAAGUGAUGAUAAUUCGAAUCACGAUCUGUUUGCACUUCCAGCAU ----((-----------(----------((........)))))..(((.((((((((.....)))))))).((((..((((..(((.....)))..))))..)))))))..... ( -23.30) >DroEre_CAF1 447 92 + 1 -GUCU---------------------UUGCUUACACAUGCAGAUCGGAAAAUGUCGUCUCCAAUGACGUUAAGUGAUGGUAAUUGGCGUCCCGGUCUGUCUGGACUUCUUGCAA -....---------------------((((.....((.(((((((((..((((((((.....))))))))....((((.(....).))))))))))))).))........)))) ( -26.62) >DroWil_CAF1 458 109 + 1 UUUUUCCUCCUU----CUGG-GCUUUAGACUUACACAUGGAGAUCCGAGAAUGUCGUUUCCAGCGACGUUAAGUGAUGGUAAUUUGCAUCGCGAUCUGUUUGAACUUCUUGUAA ............----..((-(.(((((((...(....).(((((....((((((((.....))))))))..((((((........)))))))))))))))))).)))...... ( -24.50) >DroMoj_CAF1 482 92 + 1 -AUUUU-----------U----------GCAUACACAUGGAGAUCUGAGAAUGUCGUUUCCAGCGACGUUAAGUGAUGAUAAUUGGCAUCACGAUCUGCUUGCACUUCCUGCAA -....(-----------(----------(((....((.(.(((((....((((((((.....))))))))..((((((........))))))))))).).)).......))))) ( -26.60) >DroAna_CAF1 470 101 + 1 CCUCCGCGGA-----------G--CAAGGCUUACACAUGCAGAUCUGAGAAUGUCGAUUCCAGCGACGUUAAGUGAUGGUAGUUGUCGUCCCGAUCUGUCUGUACUUCCUGCAG .....(((((-----------(--(...)))...(((.(((((((....(((((((.......)))))))..(.(((((......))))).)))))))).))).....)))).. ( -27.90) >consensus _GUCUC___________U__________GCUUACACAUGCAGAUCGGAGAAUGUCGUUUCCAGCGACGUUAAGUGAUGGUAAUUGGCAUCCCGAUCUGUCUGCACUUCCUGCAA ...................................((.(.(((((....((((((((.....))))))))..(.((((........)))).)))))).).))............ (-16.50 = -15.70 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:47 2006