Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 136,021 – 136,118 |
Length | 97 |
Max. P | 0.661265 |
Location | 136,021 – 136,118 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -18.33 |
Energy contribution | -18.67 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.27 |
Mean z-score | -1.88 |
Structure conservation index | 0.61 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 136021 97 + 27905053 CUGCAUAGCUUGCAAGACCUCUGUAGACUUUUGCAGAGAUCCAGCUACACGCAAGGUGGCUGCAAGGAGGAUUCGAUAAUCAGGUCGUAUCAAACAA ........(((((..((.((((((((....)))))))).)).((((((.(....))))))))))))...(((.((((......)))).)))...... ( -32.80) >DroSec_CAF1 1848 97 + 1 CUGCAUAGCUUGCAUGACUUCUGUAGACUUUUGCAGAGAUCCUGCUACUCGCAAGGUGGCUGCAAGGAGGAAUCGAUAGUCAGGUCGUAUCAGAAAA (((.(((.((((((.((.((((((((....)))))))).))..(((((.(....)))))))))))).......((((......)))))))))).... ( -28.50) >DroSim_CAF1 337 97 + 1 CUGCAUAGCUUGCAUGACUUCUGUAGACUUUUGCAGAGAUCCUGCUACUCGCAAGGUGGCUGCAAGGAGGAAUCGAUAGUCAGGUCGUAUCAGAAAA (((.(((.((((((.((.((((((((....)))))))).))..(((((.(....)))))))))))).......((((......)))))))))).... ( -28.50) >DroEre_CAF1 337 96 + 1 CUGCAUGGCCUGCAUGACCUCUGUAGACUUCUGCAGAGAACCAGCUACCCGCAAGGUGGCUACAAG-AGGAUUCGAUAGUCAGGUCGUGUCAAAGAA ..(((((((((((.....((((((((....))))))))....((((((.(....))))))).....-...........).))))))))))....... ( -38.20) >DroYak_CAF1 337 97 + 1 UUGCAUGGCUUGCAAGACGUCUGUAGACUUUUGCAAAGAUCCAGCUACACGCAAGGUGGCUACAAGUAGGAUUCGAUAGCCGGGUCUUGUGAAAGAA (((((.....)))))............((((..(((.(((((((((((.(....))))))).......((.........))))))))))..)))).. ( -31.50) >DroMoj_CAF1 337 95 + 1 CUGCAUGGCCUGCAUGACUUCUGUGGAUUUCUGCAAAGAACCAGCCACCCGCAAUGUAGCUAUAAAAGAAAUUCAAAGAUCAAUU--AGUGGCAGUA (((((((((.(((((.......((((..((((....))))....)))).....))))))))))....(.....)...........--....)))).. ( -19.70) >consensus CUGCAUAGCUUGCAUGACUUCUGUAGACUUUUGCAGAGAUCCAGCUACACGCAAGGUGGCUACAAGGAGGAUUCGAUAGUCAGGUCGUAUCAAAGAA (((((.((.(((((.(....)))))).))..))))).......(((((.(....)))))).........(((.((((......)))).)))...... (-18.33 = -18.67 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:07 2006