| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,117,861 – 24,118,055 |
| Length | 194 |
| Max. P | 0.767793 |
| Location | 24,117,861 – 24,117,958 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.49 |
| Mean single sequence MFE | -46.24 |
| Consensus MFE | -34.25 |
| Energy contribution | -35.08 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.672496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24117861 97 - 27905053 CAAACGGACCCGACGGCAUUGUGAGGCCGCAGGGCCCGCAAUUGGGCACGGCGCACGGUCCACCCGGACCGCAUCUCGGCCCACAGGGUCCGCA---CGG---- ....(((((((......((((((.((((....))))))))))(((((.(((....((((((....))))))....))))))))..)))))))..---...---- ( -50.70) >DroPse_CAF1 324461 104 - 1 UAAAGGGUCCCGAAGGCAUGGUCAGACCGCAGGGUCCGCAAUUCGGCACAGCGCAUGGCCCGCAGGGACCACAACGUGGCCCACACGGUCCGCAGCCCGGACCA .....((((((....((..(((((...(((...(((((.....))).)).)))..))))).)).)))))).....(((.....)))((((((.....)))))). ( -43.20) >DroSim_CAF1 305033 97 - 1 CAAACGGACCCGACGGCAUUGUGAGGCCGCAGGGCCCGCAAUUGGGCACGGCGCAUGGUCCACCCGGACCGCAUCUCGGCCCACAGGGUCCGCA---CGG---- ....(((((((......((((((.((((....))))))))))(((((.(((....((((((....))))))....))))))))..)))))))..---...---- ( -49.00) >DroEre_CAF1 320396 97 - 1 CAAACGGACCCGACGGCAUUGUGAGGCCGCAGGGCCCGCAAUUGGGCACAGCGCACGGUCCACCCGGACCGCAUCUCGGCCCACAGGGUCCGCA---CGG---- ....(((((((......((((((.((((....))))))))))(((((........((((((....)))))).......)))))..)))))))..---...---- ( -47.96) >DroWil_CAF1 371188 95 - 1 UGAAUGGACCAGACGGCAUUGUCAUGCCGCAGGGUCCGCAAUUUGGUACAGCGCACGGACCGCACGGCCCACAGCGGGGACCAAAUGGCCCGCA---U------ .....(((((...((((((....))))))...)))))((.(((((((.(..(((..((.((....)).))...)))..)))))))).)).....---.------ ( -37.40) >DroYak_CAF1 319052 97 - 1 CAAACGGACCCGACGGCAUCGUGAGGCCGCAGGGCCCGCAAUUGGGCACGGCGCACGGUCCACCCGGACCGCAUCUCGGCCCACAGGGUCCGCA---CGG---- ....(((((((((.....))(((.((((((...(((((....)))))...))...((((((....))))))......))))))).)))))))..---...---- ( -49.20) >consensus CAAACGGACCCGACGGCAUUGUGAGGCCGCAGGGCCCGCAAUUGGGCACAGCGCACGGUCCACCCGGACCGCAUCUCGGCCCACAGGGUCCGCA___CGG____ ....((((((((.((((........))))).((((((((...........)))..((((((....))))))......)))))...)))))))............ (-34.25 = -35.08 + 0.84)
| Location | 24,117,958 – 24,118,055 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 90.65 |
| Mean single sequence MFE | -44.23 |
| Consensus MFE | -37.61 |
| Energy contribution | -37.83 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24117958 97 - 27905053 GGCGAACAGGGUCCGCAGGGUCCGCAAGGACCGCAAGGACUAUUGCCGAGCGGUCCACAUGGCCCGCAUGGAGCACAGGGUCCACACGGAGCCGGGA (((((....(((((....(((((....)))))....))))).)))))......(((....((((((..((((.(....).))))..))).))).))) ( -45.20) >DroSec_CAF1 304989 97 - 1 GGCGAACAGGGUCCGCAGGGUCCGCAAGGACCGCAAGGACUAUUGCCGAGCGGUCCACAUGGCCCGCAUGGAGCACAGGGUCCACACGGAGCAGGGA (((((....(((((....(((((....)))))....))))).)))))......(((.....(((((..((((.(....).))))..))).))..))) ( -42.60) >DroSim_CAF1 305130 97 - 1 GGCGAACAGGGUCCGCAGGGUCCGCAAGGACCGCAAGGACUAUUGCCGAGCGGUCCACAUGGCCCGCAUGGAGCACAGGGUCCACACGGAGCAGGGA (((((....(((((....(((((....)))))....))))).)))))......(((.....(((((..((((.(....).))))..))).))..))) ( -42.60) >DroEre_CAF1 320493 97 - 1 GGAGAACAGGGUCCGCAGGGUCCGCAAGGACCACAAGGACUGUUGCCGAGCGGUCCGCAUGGCCCGCAGGGAGCACAGGGUCCACAUGGAGCCGGGA .........(((((....(((((....)))))....)))))(((.((..((((.((....)).)))).)).)))...((.(((....))).)).... ( -45.00) >DroYak_CAF1 319149 97 - 1 GGCGAACAGGGUCCGCAGGGUCCGCAAGGACCACAAGGACUGUUGCCGAGCGGUCCGCAUGGCCCGCAGGGAGCGCAGGGUCCACAUGCAGACGGGA (((((....(((((....(((((....)))))....))))).)))))...(.(((.(((((((((((.(....))).))))...))))).))).).. ( -47.30) >DroAna_CAF1 312236 97 - 1 GGCGAACAGGGUCCGCAGGGCCCACAUGGCCCGCAUGGGCUAUUGCUGAGCGGUCCGCACGGACCACAAGGAGCGCAGGGUCCACAUGGUGCCGGUA ((((....((..((((.(((((.....)))))((.(.(((....))).)(.(((((....))))).).....)))).))..))......)))).... ( -42.70) >consensus GGCGAACAGGGUCCGCAGGGUCCGCAAGGACCGCAAGGACUAUUGCCGAGCGGUCCACAUGGCCCGCAUGGAGCACAGGGUCCACACGGAGCCGGGA (((((....(((((....(((((....)))))....))))).)))))..((((.((....)).))))..(((.(....).))).............. (-37.61 = -37.83 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:31 2006