| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,116,685 – 24,116,776 |
| Length | 91 |
| Max. P | 0.602785 |
| Location | 24,116,685 – 24,116,776 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -21.35 |
| Consensus MFE | -14.91 |
| Energy contribution | -14.74 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24116685 91 + 27905053 -CCGGUCCGAA----------A-AAAGC--GGCCUGCCUACAUAAAGGCGCUAGCAUAUUAAAGGCUUAAACCCACUCAACGGCAGAUGCCAUAUUGUUGAAAUA -..((.(((..----------.-....)--)))).((((........((....)).......))))..........((((((((....))).....))))).... ( -19.36) >DroPse_CAF1 323158 102 + 1 GAUUGGUGGAAAACUGGAA--A-AAAAUUGAAACUGCCUGCAUAAAGGCGCUAGCAUAUUAAAGGCUUAAACCCACUCAGCGGCAGAUGCCAUAUUGCUGAAAUA .....((((..........--.-............((((......))))(((...........)))......))))((((((((....))).....))))).... ( -22.30) >DroEre_CAF1 319212 90 + 1 -CCCGCCGAA-----------A-AAAGC--UGCCCGCCUACAUAAAGGCGCUAGCAUAUUAAAGGCUUAAACCCACUCAACGGCAGAUGCCAUAUUGUUGAAAUA -...(((...-----------.-...((--((..(((((......))))).))))........)))..........((((((((....))).....))))).... ( -22.26) >DroYak_CAF1 317864 95 + 1 -UCGGGCCAAU------AAAAA-AGGGC--CGCCUGCCUACAUAAAGGCGCUAGCAUAUUAAAGGCUUAAACCCACUCAACGGCAGAUGCCAUAUUGUUGAAAUA -...((((...------.....-..)))--)((((((((......))))(....).......))))..........((((((((....))).....))))).... ( -24.10) >DroAna_CAF1 310947 88 + 1 -CUG--CUG-A----------A-AAAAC--GCACUGCCUGCAUAAAGGCGCUAGCAUAUUAAAGGCUUAAACCCACUCAACGGCAGAUGCCAUAUUGCUGAAAUA -(((--(((-.----------.-.....--((..(((((......)))))...))........((......)).......))))))................... ( -17.80) >DroPer_CAF1 324967 103 + 1 GAUUGGUGGAAAACUGGAA--AAAAAAUUGAAACUGCCUGCAUAAAGGCGCUAGCAUAUUAAAGGCUUAAACCCACUCAGCGGCAGAUGCCAUAUUGCUGAAAUA .....((((..........--..............((((......))))(((...........)))......))))((((((((....))).....))))).... ( -22.30) >consensus _CCGGGCGGAA__________A_AAAAC__AGACUGCCUACAUAAAGGCGCUAGCAUAUUAAAGGCUUAAACCCACUCAACGGCAGAUGCCAUAUUGCUGAAAUA ...................................((((........((....)).......))))..........((((((((....))).....))))).... (-14.91 = -14.74 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:29 2006