Locus 8997

Sequence ID 3R_DroMel_CAF1
Location 24,115,509 – 24,115,607
Length 98
Max. P 0.790850
window14420

overview

Window 0

Location 24,115,509 – 24,115,607
Length 98
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 83.95
Mean single sequence MFE -34.85
Consensus MFE -24.64
Energy contribution -26.67
Covariance contribution 2.03
Combinations/Pair 1.08
Mean z-score -2.91
Structure conservation index 0.71
SVM decision value 0.59
SVM RNA-class probability 0.790850
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24115509 98 - 27905053
GAAACCCGGUCGAGAUGGCCCGGCUAAGGCGGCGCAAUUAGCGGACUUAGUUCGGGACUAGGCCCAAA-ACAAUGUUGGGCUGGGAA----AUGGGAAAAUAA
....((((.((....(((((((((((((.(.((.......)).).))))).))))).)))(((((((.-......))))))).))..----.))))....... ( -35.90)
>DroSec_CAF1 302544 99 - 1
GAAUCCCGGUCGAGAUGGCCCGGCUAAGGCGGCGCAAUUAGCGGACUUAGUUCGGGACUAGGCCCAAAAAAAAUAUUGGGCUGGGAA----AUGGGAAAAUAA
...(((((.((....(((((((((((((.(.((.......)).).))))).))))).)))(((((((........))))))).))..----.)))))...... ( -37.60)
>DroSim_CAF1 302696 98 - 1
GAAUCCCGGUCGAGAUGGCCCGGCUAAGGCGGCGCAAUUAGCGGACUUAGUUCGGGACUAGGCCCAAA-ACAAUGUUGGGCUGGGAA----AUGGGAAAAUAA
...(((((.((....(((((((((((((.(.((.......)).).))))).))))).)))(((((((.-......))))))).))..----.)))))...... ( -37.30)
>DroEre_CAF1 318073 97 - 1
GGAUCCCUGUCGAGUUGGCCCGGCUAAGGCGGCGCAAUUAGCGGACUUAGUUCAAGACUAGGC-CGAA-ACAAUGUUGGGCUGGGAA----AUGGGAAAAUAA
...((((..((...(..(((((((...(.((((((.....))....((((((...))))))))-))..-.)...)))))))..))).----..))))...... ( -32.40)
>DroYak_CAF1 316715 98 - 1
GGAUCCCUGUCGAGAUGGCCCGGCUAAGGCGGCGCAAUUAGCGGACUUAGUUCGGGACUAGGCCCGAA-ACAAUGUUGGGCUGGGAA----AUGGGAAAAUAA
...((((..((....(((((((((((((.(.((.......)).).))))).))))).)))(((((((.-......)))))))..)).----..))))...... ( -37.20)
>DroAna_CAF1 309996 83 - 1
---------UAGAGUUUUCCCGGCUAAGGCGUCGCAAUUAGCGGACUUAGUUUGGGCCU----CCGAA-UGAAUA---GUCUGGGGAGGCUAUGGAAAAG---
---------.....((((((.(((((((...((((.....)))).)))))))..(((((----((...-.((...---.))...)))))))..)))))).--- ( -28.70)
>consensus
GAAUCCCGGUCGAGAUGGCCCGGCUAAGGCGGCGCAAUUAGCGGACUUAGUUCGGGACUAGGCCCAAA_ACAAUGUUGGGCUGGGAA____AUGGGAAAAUAA
...((((...........((((((((((....(((.....)))..))))).))))).((.(((((((........))))))).))........))))...... (-24.64 = -26.67 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:28 2006