Locus 8996

Sequence ID 3R_DroMel_CAF1
Location 24,114,807 – 24,114,913
Length 106
Max. P 0.678895
window14419

overview

Window 9

Location 24,114,807 – 24,114,913
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.50
Mean single sequence MFE -29.10
Consensus MFE -15.38
Energy contribution -15.52
Covariance contribution 0.14
Combinations/Pair 1.23
Mean z-score -2.07
Structure conservation index 0.53
SVM decision value 0.30
SVM RNA-class probability 0.678895
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24114807 106 + 27905053
UGGCAUUGCGUUUUAUUUGUCAUUUCCGGUUUGUGCCGGAAGUUAAAAUUAUUGAAAUCAAACGGAAAUGCAUCGAAGCAAAUGCGUAAAAAA--------------GCGGGAGCCGAAA
.(((.((.((((((.(((((.(((((((((....)))))))))........(((....)))))))).((((((........))))))...)))--------------))).))))).... ( -30.00)
>DroVir_CAF1 325615 107 + 1
UGACGCUGCAUUUUAUUUGCCAUUUCCGGUUUAUGCAGGAAGUUUAAAUUAUUGAAUGCGAGCGGAAGUGCAGCCGAGCAAAUGCAUACAAAA-------------AGUCGAAGCUGAAA
.(((((((((((((.(((((...((((.((....)).))))((((((....)))))))))))..))))))))))...((....))........-------------.))).......... ( -28.40)
>DroPse_CAF1 321316 120 + 1
UGGCGGUGCAUUUUAUUUGUCAUUUCCGGUUUGUGUCGGAAGUUGAAAUUAUUGAAAUCAAACGGAAAUGCAGCGAAGCAAAUGCAUAAAAAACGCCCAGAGCCAGAGCCAAAGCCGAAA
((((.((((((((..(((((((((((((.((((..((((.(((....))).))))...))))))))))))..)))))..)))))))).......((.....))....))))......... ( -32.60)
>DroWil_CAF1 367614 113 + 1
UGACGCUUCAUUUUAUUUGUCAUUUCCGGUUUAUGCCGGAAGUUUAAAUUAUUGAAAUCGAACGGAAACGCACCGAAGCAAAUGCAUAAAAAG-------AACCGGACCCGGAGCCGAAA
....(((((.....(((((..(((((((((....))))))))).))))).............((....))....)))))..............-------..(((....)))........ ( -28.40)
>DroMoj_CAF1 345438 107 + 1
UGACACAGCAUUUUAUUUGUCAUUUCCGGUUUAUGCAGGAAGUUUAAAUUAUUGAAUACGCCAGGAAGUGCAGACGAGUCAAUGCAUACAAAA-------------AUUCGUAGCUGAAA
.....((((.......(((.((((((((((.(((.(((.((.......)).))).))).))).))))))))))((((((...((....))...-------------)))))).))))... ( -24.90)
>DroAna_CAF1 309380 105 + 1
UGGCAGUGCAUUUUAUUUGUCAUUUCCGGUUUGUGCCGGAAGUUGAAAUUAUUGAAAUCAAACGGAAAUGCAGCGUAGCAAAUGCAUAAAAAA---------------CAGAAGCCGAAA
.(((..((((((((.....(((((((((((....)))))))).))).....(((....)))...))))))))((((.....))))........---------------.....))).... ( -30.30)
>consensus
UGACACUGCAUUUUAUUUGUCAUUUCCGGUUUAUGCCGGAAGUUUAAAUUAUUGAAAUCAAACGGAAAUGCAGCGAAGCAAAUGCAUAAAAAA_____________AGCCGAAGCCGAAA
......((((((((.......(((((((((....)))))))))........(((....)))...)))))))).....((....))................................... (-15.38 = -15.52 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:27 2006