Locus 8995

Sequence ID 3R_DroMel_CAF1
Location 24,112,699 – 24,112,790
Length 91
Max. P 0.829347
window14418

overview

Window 8

Location 24,112,699 – 24,112,790
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 92.75
Mean single sequence MFE -24.70
Consensus MFE -19.56
Energy contribution -19.80
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.80
Structure conservation index 0.79
SVM decision value 0.71
SVM RNA-class probability 0.829347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24112699 91 + 27905053
UCAACAUGCACACCCAAUACACCUGCUGACGUCAGUAUAGUCGCCCCCAAAAAUAGCUGAGAAAUCAGCGACUGUCUGGUUUCGCAUGUGG
...................(((.(((.((..((((.(((((((....).......(((((....)))))))))))))))..))))).))). ( -27.80)
>DroSec_CAF1 299707 91 + 1
UCAACAUGCACACCCAAUACAUCUGCUGACGUCAGUAUAGCCGCCCCCAAAAAUAGCUGAGAAAUCAGCGACUGUCUGGUUUCGCAUGUGG
...((((((....(((..((((((((((....)))))..................(((((....))))))).))).)))....)))))).. ( -25.50)
>DroSim_CAF1 299877 91 + 1
UCAACAUGCACACCCAAUACAUCUGCUGACGUCAGUAUAGCCGCCCCCAAAAAUAGCUGAGAAAUCAGCGACUGUCUGGUUUCGCAUGUGG
...((((((....(((..((((((((((....)))))..................(((((....))))))).))).)))....)))))).. ( -25.50)
>DroEre_CAF1 313447 91 + 1
UCAGCAUGCACACCUAAUACCUUUGCUGACGUCAGUAUAACCGCCCCUAAAAAUAGCUGAGAAAUCAGCGACUGUCUGGUUUCGCAUAUGG
.((..((((..(((..(((....(((((....)))))..................(((((....)))))...)))..)))...)))).)). ( -21.60)
>DroYak_CAF1 313845 91 + 1
UCAACAUGCACACCUAAUGCAUCUGCUGACGUCAGUAUGACCGCCCUCGAAAAAAGCAGAGAAAUCAGCGACUGUCUGGUUUCGCAUAUGG
............((..((((.((((((...(((.....)))((....)).....))))))(((((((((....).))))))))))))..)) ( -23.10)
>consensus
UCAACAUGCACACCCAAUACAUCUGCUGACGUCAGUAUAGCCGCCCCCAAAAAUAGCUGAGAAAUCAGCGACUGUCUGGUUUCGCAUGUGG
...((((((..............(((((....))))).......................(((((((((....).)))))))))))))).. (-19.56 = -19.80 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:26 2006