| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,110,720 – 24,110,827 |
| Length | 107 |
| Max. P | 0.807205 |
| Location | 24,110,720 – 24,110,827 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.84 |
| Mean single sequence MFE | -27.13 |
| Consensus MFE | -18.52 |
| Energy contribution | -17.80 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24110720 107 - 27905053 UGCACUCCAGGGGCGUUGAAGAAAUCAAAUUAAGAGCAUUUUCUU--UGGCGAAACUU-UUGCGCCUGUUUAGAGUUUCGUAAUACUUCAGCACCGACCGGCAUCUCCGU (((......((((.(((((((..........(((((....)))))--..(((((((((-(.((....))..))))))))))....))))))).))..)).)))....... ( -26.50) >DroVir_CAF1 319584 107 - 1 UGCACUCCAGGGGCGCCGAAGAAAUCAAAUUAAGAAAAUUUCCUUUCUGGCAAAACUU-UUGUGCCUGUUUAGAGUUUUGUAAUACUUCAACGCUU--CGGCGUCUGCGU .((.(....)(((((((((((...........(((((......))))).(((((((((-(...........))))))))))............)))--)))))))))).. ( -30.60) >DroGri_CAF1 275135 93 - 1 UGUACUCCAGGGGCGUUGAAGAAAUCAAAUUAAGAAAAUUUCCUUUUUGGCAAAACUU-UUGCGCCUGCUUAGAGUUUUGUAAUACUUCAAC----------------GU ............(((((((((....((((..(((........)))))))(((((((((-(.((....))..))))))))))....)))))))----------------)) ( -23.80) >DroYak_CAF1 311833 95 - 1 UGCACUCCAGGGGCGUAGAAGAAAUCAAAUUAAGAGCAUUUUCUU--UGGCGAAACUU-UUGCGCCUGUUUAGAGUUUUGUAAUACUUCAGCACCGAC------------ (((((((.(.(((((((((((...((.....(((((....)))))--....))..)))-)))))))).)...))))..((........))))).....------------ ( -21.60) >DroMoj_CAF1 338509 106 - 1 UGCACUCCAGGGGCGUUGAAGAAAUCAAAUUAAGAAAAUUUCCCUUUU-GCAAAACUU-UUACGCCUGUUUAGAGUUUUGUAAUAUUUCAACGCUU--UGGCGUCUCCGU ...((.((((((.((((((((((((............)))))....((-(((((((((-(.((....))..))))))))))))...))))))))))--))).))...... ( -27.60) >DroAna_CAF1 305466 108 - 1 UGCACUCCAGGGGCGUUGAAGAAAUCAAAUUAAGAACAUUUUCUU--UGGCAAAACUUUUUGCGCCAGUUUAGAGUUUUGUAAUACUUCAACGACCACCACUACCCCUGC .......((((((((((((((..........(((((....)))))--..((((((((((..((....))..))))))))))....))))))))..........)))))). ( -32.70) >consensus UGCACUCCAGGGGCGUUGAAGAAAUCAAAUUAAGAAAAUUUCCUU__UGGCAAAACUU_UUGCGCCUGUUUAGAGUUUUGUAAUACUUCAACGCCG__CGGC_UCUCCGU .((.((....))))(((((((...((.......))..............(((((((((...((....))...)))))))))....))))))).................. (-18.52 = -17.80 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:25 2006