Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,110,507 – 24,110,607 |
Length | 100 |
Max. P | 0.892321 |
Location | 24,110,507 – 24,110,607 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 75.49 |
Mean single sequence MFE | -27.09 |
Consensus MFE | -7.69 |
Energy contribution | -9.75 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.10 |
Mean z-score | -2.83 |
Structure conservation index | 0.28 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24110507 100 - 27905053 AUAAGU---AGCAAAAAUAGCAACAAGGCA--GCAGCAGUUUUGGCCUUAAA-----------GGCAAUAAGAUUGCCUGCUGGCCCAAAAGUAUGUGCUCGCUUGUCUCAUAAAA ((((((---((((...(((.......((((--(((((((((((((((.....-----------)))..)))))))).))))).)))......))).)))).))))))......... ( -30.52) >DroVir_CAF1 319376 105 - 1 AGAAACAACUGCAAAAACAGCAACAGGGGAAGACAUCAGU--UGGCUUUAAAAUCCAGAAAAGGCCAAUAAAAAUUUCAG----C-CCAAAG----UACUCGUUUGCCUAAUAAAA ..........(((((...((......(((..((.((..((--(((((((...........)))))))))....)).))..----)-))....----..))..)))))......... ( -18.20) >DroSec_CAF1 297587 100 - 1 AUAAAU---AGCAAAAAUAGCAACAAGGCA--GCAGCAUUUUUGGACCAAAA-----------GCCAAUGAGAUUGCCUGCUGGCCCAAAAGUGUGUGCUCGCUAGUCUCAUAAAA .....(---(((.......((......))(--(((((((((((((.(((..(-----------(.((((...)))).))..))).)))))))))).)))).))))........... ( -28.10) >DroSim_CAF1 297696 100 - 1 AUAAAU---AGCAAAAAUAGCAUCAAGGCA--GCAGCAUUUUUGGACCAAAA-----------GCCAAUGAGAUUGCCUGCUGGCCCAAAAGUGUGUGCUCGCUUGUCUCAUAAAA ......---.((.......))....(((((--(((((((((((((.(((..(-----------(.((((...)))).))..))).)))))))))).)))).))))........... ( -27.90) >DroEre_CAF1 311313 90 - 1 AUAAAU------------AGCAACAAGGCA--GCAGCAGUUUUGGCCUUAAA-----------GCCAA-AAGAUUGCCUGCUGGCCCGAAAGUGUUUGCCCGCUUGUCUCAUAAAA ......------------.((((((.((((--((((((((((((((......-----------)))))-..))))).))))).)))(....))).))))................. ( -26.50) >DroYak_CAF1 311632 91 - 1 AUAAAU------------AGCAACAAGGCA--GCAGCAGUUUUGGCCUUAAA-----------GCCAAUGAGAUUGGCUGCUGGCCCAAAAGUGUGUGCUCGCUUGUCUCAUAAAA ......------------.(..((((((.(--((((((.((((((((....(-----------((((((...)))))))...)).)))))).))).))))).)))))..)...... ( -31.30) >consensus AUAAAU___AGCAAAAAUAGCAACAAGGCA__GCAGCAGUUUUGGCCUUAAA___________GCCAAUAAGAUUGCCUGCUGGCCCAAAAGUGUGUGCUCGCUUGUCUCAUAAAA ...................((.....(((...((((((...(((((.................)))))......)).))))..)))...(((((......)))))))......... ( -7.69 = -9.75 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:24:25 2006